miRNA display CGI


Results 1 - 17 of 17 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24969 3' -51.7 NC_005284.1 + 23661 0.66 0.891886
Target:  5'- -cGGGGCGaucaauucuGCAUCucguaGUGGAGCGGUAu -3'
miRNA:   3'- ucUUCUGC---------UGUAGug---CACCUUGCCGU- -5'
24969 3' -51.7 NC_005284.1 + 40999 0.66 0.876606
Target:  5'- -----cCGGCAUUGC-UGGAACGGCGa -3'
miRNA:   3'- ucuucuGCUGUAGUGcACCUUGCCGU- -5'
24969 3' -51.7 NC_005284.1 + 52291 0.67 0.860267
Target:  5'- cGAAGGCaACGcuuaCugGUGaGGGCGGCAa -3'
miRNA:   3'- uCUUCUGcUGUa---GugCAC-CUUGCCGU- -5'
24969 3' -51.7 NC_005284.1 + 10109 0.67 0.851719
Target:  5'- uGAAGACGGCGaccgaaaGCGcGGcGACGGCGc -3'
miRNA:   3'- uCUUCUGCUGUag-----UGCaCC-UUGCCGU- -5'
24969 3' -51.7 NC_005284.1 + 54681 0.67 0.842931
Target:  5'- cGAAGACGGCG-CGCGagcGGuuGCGGUg -3'
miRNA:   3'- uCUUCUGCUGUaGUGCa--CCu-UGCCGu -5'
24969 3' -51.7 NC_005284.1 + 9767 0.68 0.805553
Target:  5'- gAGgcGACGGCGcaagcUCACGUcGcAACGGCGc -3'
miRNA:   3'- -UCuuCUGCUGU-----AGUGCAcC-UUGCCGU- -5'
24969 3' -51.7 NC_005284.1 + 45200 0.68 0.795705
Target:  5'- cGAAGACGGC----CGUGucGAACGGCAc -3'
miRNA:   3'- uCUUCUGCUGuaguGCAC--CUUGCCGU- -5'
24969 3' -51.7 NC_005284.1 + 22139 0.68 0.775484
Target:  5'- gGGAgAGGCGGCA--GCGUGGcgcuaucgaacgAGCGGCGa -3'
miRNA:   3'- -UCU-UCUGCUGUagUGCACC------------UUGCCGU- -5'
24969 3' -51.7 NC_005284.1 + 48876 0.69 0.753585
Target:  5'- gAGAAGuCGGCG-C-CGUGGAcacgcccGCGGCGa -3'
miRNA:   3'- -UCUUCuGCUGUaGuGCACCU-------UGCCGU- -5'
24969 3' -51.7 NC_005284.1 + 42005 0.69 0.745085
Target:  5'- gGGAGGuGCGACAgcguaucuucgcgagCGCGUGccggccGAGCGGCAu -3'
miRNA:   3'- -UCUUC-UGCUGUa--------------GUGCAC------CUUGCCGU- -5'
24969 3' -51.7 NC_005284.1 + 16228 0.7 0.711482
Target:  5'- -cAGGcCGGCcUCGCG-GGGACGGCGa -3'
miRNA:   3'- ucUUCuGCUGuAGUGCaCCUUGCCGU- -5'
24969 3' -51.7 NC_005284.1 + 46753 0.71 0.633258
Target:  5'- cGAAGuCGGCgccgaGUCACG-GGAACGGUc -3'
miRNA:   3'- uCUUCuGCUG-----UAGUGCaCCUUGCCGu -5'
24969 3' -51.7 NC_005284.1 + 14127 0.72 0.584926
Target:  5'- uGAGGACGGCGauuUCAuCGUGcgucaguacgacgaGAGCGGCAa -3'
miRNA:   3'- uCUUCUGCUGU---AGU-GCAC--------------CUUGCCGU- -5'
24969 3' -51.7 NC_005284.1 + 9497 0.73 0.500695
Target:  5'- cAGgcGGCGACA--GCGUGGGuCGGCGc -3'
miRNA:   3'- -UCuuCUGCUGUagUGCACCUuGCCGU- -5'
24969 3' -51.7 NC_005284.1 + 19122 0.75 0.409733
Target:  5'- -uGAGACGACAcCGCGcGcGAACGGCAu -3'
miRNA:   3'- ucUUCUGCUGUaGUGCaC-CUUGCCGU- -5'
24969 3' -51.7 NC_005284.1 + 3791 0.76 0.372734
Target:  5'- aGGAGGACGACAagggucUCuACG-GGGAUGGCGa -3'
miRNA:   3'- -UCUUCUGCUGU------AG-UGCaCCUUGCCGU- -5'
24969 3' -51.7 NC_005284.1 + 52908 1.09 0.002326
Target:  5'- uAGAAGACGACAUCACGUGGAACGGCAg -3'
miRNA:   3'- -UCUUCUGCUGUAGUGCACCUUGCCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.