Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24969 | 5' | -51.4 | NC_005284.1 | + | 420 | 0.7 | 0.675504 |
Target: 5'- aAUGGCgagUUUCGGCGCAAUgCUGg -3' miRNA: 3'- cUACCGaaaGGAGCUGCGUUAgGACg -5' |
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24969 | 5' | -51.4 | NC_005284.1 | + | 10484 | 0.66 | 0.868071 |
Target: 5'- cAUGGCagUUUCUUCGACGUAgagGUUC-GCg -3' miRNA: 3'- cUACCG--AAAGGAGCUGCGU---UAGGaCG- -5' |
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24969 | 5' | -51.4 | NC_005284.1 | + | 14587 | 0.67 | 0.851029 |
Target: 5'- -uUGGCgaucUCgUCGGCGCGAaaguguUCCgGCg -3' miRNA: 3'- cuACCGaa--AGgAGCUGCGUU------AGGaCG- -5' |
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24969 | 5' | -51.4 | NC_005284.1 | + | 15928 | 0.66 | 0.89824 |
Target: 5'- --cGGCUUUCCggcguuccugacgUCGGCGCGcgacgCCgGCc -3' miRNA: 3'- cuaCCGAAAGG-------------AGCUGCGUua---GGaCG- -5' |
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24969 | 5' | -51.4 | NC_005284.1 | + | 16031 | 0.73 | 0.507242 |
Target: 5'- --cGGacauugCCUCGACGCAAUCgaGCu -3' miRNA: 3'- cuaCCgaaa--GGAGCUGCGUUAGgaCG- -5' |
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24969 | 5' | -51.4 | NC_005284.1 | + | 25307 | 0.66 | 0.872982 |
Target: 5'- --gGGCgUUCCcugCGucaacuacuuaacCGCAGUCCUGCu -3' miRNA: 3'- cuaCCGaAAGGa--GCu------------GCGUUAGGACG- -5' |
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24969 | 5' | -51.4 | NC_005284.1 | + | 28436 | 0.67 | 0.842136 |
Target: 5'- -uUGGCagUCUuaGACGCAggUCUGCc -3' miRNA: 3'- cuACCGaaAGGagCUGCGUuaGGACG- -5' |
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24969 | 5' | -51.4 | NC_005284.1 | + | 30688 | 0.69 | 0.720202 |
Target: 5'- --cGGCUUUCUUgcCGACGCGc-UCUGCa -3' miRNA: 3'- cuaCCGAAAGGA--GCUGCGUuaGGACG- -5' |
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24969 | 5' | -51.4 | NC_005284.1 | + | 34222 | 0.67 | 0.851029 |
Target: 5'- --cGGCUUUCgaUUCGuucuGCGCcgucgauGUCCUGCg -3' miRNA: 3'- cuaCCGAAAG--GAGC----UGCGu------UAGGACG- -5' |
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24969 | 5' | -51.4 | NC_005284.1 | + | 36653 | 0.73 | 0.528998 |
Target: 5'- -cUGGCcgUCgUCGuCGCuuUCCUGCa -3' miRNA: 3'- cuACCGaaAGgAGCuGCGuuAGGACG- -5' |
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24969 | 5' | -51.4 | NC_005284.1 | + | 40572 | 0.66 | 0.868071 |
Target: 5'- ---uGUUUUCUUCGACGCAG-CC-GCa -3' miRNA: 3'- cuacCGAAAGGAGCUGCGUUaGGaCG- -5' |
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24969 | 5' | -51.4 | NC_005284.1 | + | 43368 | 0.67 | 0.842136 |
Target: 5'- --cGGUUUUCgcgaUCGACGCAgcgcgucaaGUCCcGCg -3' miRNA: 3'- cuaCCGAAAGg---AGCUGCGU---------UAGGaCG- -5' |
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24969 | 5' | -51.4 | NC_005284.1 | + | 43625 | 0.66 | 0.876203 |
Target: 5'- --cGGCgg-CCgCGGCGCGAg-CUGCg -3' miRNA: 3'- cuaCCGaaaGGaGCUGCGUUagGACG- -5' |
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24969 | 5' | -51.4 | NC_005284.1 | + | 48195 | 0.72 | 0.573455 |
Target: 5'- --cGGUUUUCUUCGGCGCGcgCUUacGCg -3' miRNA: 3'- cuaCCGAAAGGAGCUGCGUuaGGA--CG- -5' |
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24969 | 5' | -51.4 | NC_005284.1 | + | 50923 | 0.67 | 0.823653 |
Target: 5'- uGAUGGCcuuugccuucaUUCCgCGAuaCGCGAUCCUuGCg -3' miRNA: 3'- -CUACCGa----------AAGGaGCU--GCGUUAGGA-CG- -5' |
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24969 | 5' | -51.4 | NC_005284.1 | + | 52947 | 1.12 | 0.001502 |
Target: 5'- cGAUGGCUUUCCUCGACGCAAUCCUGCc -3' miRNA: 3'- -CUACCGAAAGGAGCUGCGUUAGGACG- -5' |
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24969 | 5' | -51.4 | NC_005284.1 | + | 53346 | 0.68 | 0.772838 |
Target: 5'- --cGGCUgucgCUUCGccaGCGCAgugacguAUCCUGCu -3' miRNA: 3'- cuaCCGAaa--GGAGC---UGCGU-------UAGGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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