miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24971 3' -55.1 NC_005284.1 + 39156 0.67 0.630281
Target:  5'- gCUGCgGAUCuGCAUcaGCaGCACGucGCCGa -3'
miRNA:   3'- -GACG-CUAGuUGUA--CG-CGUGCucCGGC- -5'
24971 3' -55.1 NC_005284.1 + 37795 0.67 0.630281
Target:  5'- -gGCGAUCGucgcCGUGUGCGCGuucGGCg- -3'
miRNA:   3'- gaCGCUAGUu---GUACGCGUGCu--CCGgc -5'
24971 3' -55.1 NC_005284.1 + 9424 0.68 0.619231
Target:  5'- -cGUGAaacUCGGCGUGuCGCuCGcGGCCGg -3'
miRNA:   3'- gaCGCU---AGUUGUAC-GCGuGCuCCGGC- -5'
24971 3' -55.1 NC_005284.1 + 43835 0.68 0.608193
Target:  5'- aUGCGuccgcUCGuCcgGCG-ACGAGGCCGg -3'
miRNA:   3'- gACGCu----AGUuGuaCGCgUGCUCCGGC- -5'
24971 3' -55.1 NC_005284.1 + 7689 0.68 0.608193
Target:  5'- -gGCGAcguaCAGCGUGCGCGUGAGcggugcGCCGa -3'
miRNA:   3'- gaCGCUa---GUUGUACGCGUGCUC------CGGC- -5'
24971 3' -55.1 NC_005284.1 + 35529 0.68 0.608193
Target:  5'- -aGCGAUUccCGUGuCGCggucGCGAGGUCGa -3'
miRNA:   3'- gaCGCUAGuuGUAC-GCG----UGCUCCGGC- -5'
24971 3' -55.1 NC_005284.1 + 32795 0.68 0.608193
Target:  5'- gUGCG-UCGGCcUGCGCggguuGCGGGGCgGc -3'
miRNA:   3'- gACGCuAGUUGuACGCG-----UGCUCCGgC- -5'
24971 3' -55.1 NC_005284.1 + 35052 0.68 0.586189
Target:  5'- uUGuCGAUCGGCuUGCGCgauugcaggacgACGAGaGCCa -3'
miRNA:   3'- gAC-GCUAGUUGuACGCG------------UGCUC-CGGc -5'
24971 3' -55.1 NC_005284.1 + 686 0.68 0.564339
Target:  5'- -gGCGAUUGGCGUGUGUuguACGAaaucgaagauGGCCGc -3'
miRNA:   3'- gaCGCUAGUUGUACGCG---UGCU----------CCGGC- -5'
24971 3' -55.1 NC_005284.1 + 27507 0.69 0.553493
Target:  5'- -gGCGAugaUCGAUggGCGCGuCGAGGCg- -3'
miRNA:   3'- gaCGCU---AGUUGuaCGCGU-GCUCCGgc -5'
24971 3' -55.1 NC_005284.1 + 44635 0.69 0.553493
Target:  5'- -aGCGcAUCAuCGUGCccguacGCGCGAGcGCCGu -3'
miRNA:   3'- gaCGC-UAGUuGUACG------CGUGCUC-CGGC- -5'
24971 3' -55.1 NC_005284.1 + 4039 0.69 0.553493
Target:  5'- gCUGCGAUCAACugGCGCuuaACGGuGGCg- -3'
miRNA:   3'- -GACGCUAGUUGuaCGCG---UGCU-CCGgc -5'
24971 3' -55.1 NC_005284.1 + 22756 0.69 0.542709
Target:  5'- gCUGCGGUCGAUcaagggGCGCGCGAucgucaGCCu -3'
miRNA:   3'- -GACGCUAGUUGua----CGCGUGCUc-----CGGc -5'
24971 3' -55.1 NC_005284.1 + 22911 0.69 0.542709
Target:  5'- -gGUGAUCAGCc-GCGCagcagACGAGGCuCGa -3'
miRNA:   3'- gaCGCUAGUUGuaCGCG-----UGCUCCG-GC- -5'
24971 3' -55.1 NC_005284.1 + 19972 0.69 0.531996
Target:  5'- -cGUGAUCGAUAUgaucggcgaccGCGCcuaugACGAGGUCGg -3'
miRNA:   3'- gaCGCUAGUUGUA-----------CGCG-----UGCUCCGGC- -5'
24971 3' -55.1 NC_005284.1 + 47299 0.69 0.521361
Target:  5'- -cGUGAUCAAC--GCGCGCGAG-CUGa -3'
miRNA:   3'- gaCGCUAGUUGuaCGCGUGCUCcGGC- -5'
24971 3' -55.1 NC_005284.1 + 16851 0.7 0.500346
Target:  5'- uUGuCGGUCGACGgcgggucguaUGCGCAgGugcuGGCCGg -3'
miRNA:   3'- gAC-GCUAGUUGU----------ACGCGUgCu---CCGGC- -5'
24971 3' -55.1 NC_005284.1 + 6676 0.7 0.500346
Target:  5'- -gGCGA-CGGCcgGCGUACGGGuCCGg -3'
miRNA:   3'- gaCGCUaGUUGuaCGCGUGCUCcGGC- -5'
24971 3' -55.1 NC_005284.1 + 30410 0.7 0.500346
Target:  5'- aUGuCGAUCGuccGCGUGCGCgacgGCGAGGUg- -3'
miRNA:   3'- gAC-GCUAGU---UGUACGCG----UGCUCCGgc -5'
24971 3' -55.1 NC_005284.1 + 37618 0.7 0.48998
Target:  5'- gUGaCGAUCGACA-GCaGCACGAgaaacagcacGGCCGc -3'
miRNA:   3'- gAC-GCUAGUUGUaCG-CGUGCU----------CCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.