miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24972 3' -57.9 NC_005284.1 + 10520 0.67 0.51405
Target:  5'- gUAGUGgAUCUggGUGCCGCcauCAGCGa -3'
miRNA:   3'- -GUCGCgUAGAa-CGCGGCGcu-GUCGCc -5'
24972 3' -57.9 NC_005284.1 + 31493 0.67 0.503772
Target:  5'- -cGCGCAUUgcGCGCCuCGgcauaACAGUGGu -3'
miRNA:   3'- guCGCGUAGaaCGCGGcGC-----UGUCGCC- -5'
24972 3' -57.9 NC_005284.1 + 11164 0.67 0.503772
Target:  5'- --aCGCAgCUcGCGCCGCGGCcgccgcgcGCGGa -3'
miRNA:   3'- gucGCGUaGAaCGCGGCGCUGu-------CGCC- -5'
24972 3' -57.9 NC_005284.1 + 10114 0.67 0.501727
Target:  5'- aCGGCGaccgaaaGCGCgGCGACGGCGc -3'
miRNA:   3'- -GUCGCguagaa-CGCGgCGCUGUCGCc -5'
24972 3' -57.9 NC_005284.1 + 57 0.67 0.493583
Target:  5'- cCGGCGCAUC---CGCCGggcgggcaaCGACGGaCGGg -3'
miRNA:   3'- -GUCGCGUAGaacGCGGC---------GCUGUC-GCC- -5'
24972 3' -57.9 NC_005284.1 + 37811 0.67 0.48349
Target:  5'- -uGCGCGUUcgGCGUgaUGCGGCGcacGCGGa -3'
miRNA:   3'- guCGCGUAGaaCGCG--GCGCUGU---CGCC- -5'
24972 3' -57.9 NC_005284.1 + 31432 0.68 0.473498
Target:  5'- gGGCGacg--UGCGCCGCuGCGGCGc -3'
miRNA:   3'- gUCGCguagaACGCGGCGcUGUCGCc -5'
24972 3' -57.9 NC_005284.1 + 10081 0.68 0.473498
Target:  5'- -cGCGCg----GCGaCCGCGACcgcGGCGGg -3'
miRNA:   3'- guCGCGuagaaCGC-GGCGCUG---UCGCC- -5'
24972 3' -57.9 NC_005284.1 + 1697 0.68 0.463609
Target:  5'- gCGGCgGCAUUacuucugcgUUGCGCCGCGAUucUGGg -3'
miRNA:   3'- -GUCG-CGUAG---------AACGCGGCGCUGucGCC- -5'
24972 3' -57.9 NC_005284.1 + 32792 0.68 0.453831
Target:  5'- cCGGUGCGUCggccUGCGCggguugCGgGGCGGCGu -3'
miRNA:   3'- -GUCGCGUAGa---ACGCG------GCgCUGUCGCc -5'
24972 3' -57.9 NC_005284.1 + 7687 0.68 0.444165
Target:  5'- uCGGCGaCGUacaGCGUgCGCGugAGCGGu -3'
miRNA:   3'- -GUCGC-GUAgaaCGCG-GCGCugUCGCC- -5'
24972 3' -57.9 NC_005284.1 + 8445 0.68 0.444165
Target:  5'- cCGGCGa-----GC-CCGCGACGGCGGa -3'
miRNA:   3'- -GUCGCguagaaCGcGGCGCUGUCGCC- -5'
24972 3' -57.9 NC_005284.1 + 220 0.68 0.444165
Target:  5'- gAGCGCGU--UGUGCCGCuGCuuuGUGGa -3'
miRNA:   3'- gUCGCGUAgaACGCGGCGcUGu--CGCC- -5'
24972 3' -57.9 NC_005284.1 + 26398 0.68 0.444165
Target:  5'- gCAGCGUggC-UGCGCCGCuucgagGugGGCGa -3'
miRNA:   3'- -GUCGCGuaGaACGCGGCG------CugUCGCc -5'
24972 3' -57.9 NC_005284.1 + 24851 0.68 0.434616
Target:  5'- gCAGUGCGUUUcGCGCaaccugCGCGAC-GUGGa -3'
miRNA:   3'- -GUCGCGUAGAaCGCG------GCGCUGuCGCC- -5'
24972 3' -57.9 NC_005284.1 + 27649 0.68 0.425187
Target:  5'- gCAGuUGCAUCgcagaUGCGUCGCGGCgGGCa- -3'
miRNA:   3'- -GUC-GCGUAGa----ACGCGGCGCUG-UCGcc -5'
24972 3' -57.9 NC_005284.1 + 16518 0.69 0.415881
Target:  5'- --aUGCGUCUUGUGCCG-GGCgcgcuGGCGGc -3'
miRNA:   3'- gucGCGUAGAACGCGGCgCUG-----UCGCC- -5'
24972 3' -57.9 NC_005284.1 + 8626 0.69 0.415881
Target:  5'- cCGGCucGUAUUUcaaUGCGgugCGCGACGGCGGg -3'
miRNA:   3'- -GUCG--CGUAGA---ACGCg--GCGCUGUCGCC- -5'
24972 3' -57.9 NC_005284.1 + 21234 0.69 0.404881
Target:  5'- gGGCGCAcauaucaGCuCGCGGCGGCGGu -3'
miRNA:   3'- gUCGCGUagaacg-CG-GCGCUGUCGCC- -5'
24972 3' -57.9 NC_005284.1 + 42015 0.69 0.397649
Target:  5'- aCAGCGUAUCUUcgcgaGCGCgUGCcGGCcgAGCGGc -3'
miRNA:   3'- -GUCGCGUAGAA-----CGCG-GCG-CUG--UCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.