miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
250 5' -50.6 AC_000008.1 + 33914 0.66 0.856283
Target:  5'- --aACAGCAGCcGCAGCGcGCccGGugUg -3'
miRNA:   3'- caaUGUUGUCGcCGUUGCaCG--UCugG- -5'
250 5' -50.6 AC_000008.1 + 17235 0.66 0.856283
Target:  5'- aGUUGCcACuggcuacgGGCcGCAACGaucGCGGACCg -3'
miRNA:   3'- -CAAUGuUG--------UCGcCGUUGCa--CGUCUGG- -5'
250 5' -50.6 AC_000008.1 + 17308 0.66 0.847216
Target:  5'- gGUUACAACAaCGGCGGuCGggccugGCAGcACa -3'
miRNA:   3'- -CAAUGUUGUcGCCGUU-GCa-----CGUC-UGg -5'
250 5' -50.6 AC_000008.1 + 9482 0.66 0.847216
Target:  5'- --gGCGACGGCgcauggucucGGUGACG-GCGcGGCCg -3'
miRNA:   3'- caaUGUUGUCG----------CCGUUGCaCGU-CUGG- -5'
250 5' -50.6 AC_000008.1 + 15367 0.66 0.837891
Target:  5'- -aUACAACuaCGGCGACccuCAGACCg -3'
miRNA:   3'- caAUGUUGucGCCGUUGcacGUCUGG- -5'
250 5' -50.6 AC_000008.1 + 1086 0.66 0.808473
Target:  5'- --gGCGGggaAGUGGCcgcgcuggucCGUGCAGACCu -3'
miRNA:   3'- caaUGUUg--UCGCCGuu--------GCACGUCUGG- -5'
250 5' -50.6 AC_000008.1 + 16218 0.67 0.79926
Target:  5'- --cGCGGCGGCGGCccugcuuaaccgcgcACGUcGCAccGGCCg -3'
miRNA:   3'- caaUGUUGUCGCCGu--------------UGCA-CGU--CUGG- -5'
250 5' -50.6 AC_000008.1 + 17739 0.67 0.755381
Target:  5'- --cACGGCcugacgGGCGGCAugcguCGUGCGcACCa -3'
miRNA:   3'- caaUGUUG------UCGCCGUu----GCACGUcUGG- -5'
250 5' -50.6 AC_000008.1 + 19448 0.68 0.744275
Target:  5'- aGUUGCGcggGgGGCGGguGCGcacgggcacgcGCAGGCCg -3'
miRNA:   3'- -CAAUGU---UgUCGCCguUGCa----------CGUCUGG- -5'
250 5' -50.6 AC_000008.1 + 7492 0.68 0.733038
Target:  5'- uUUACGGucaGGCGGUagguGugGUGCAGcgGCCg -3'
miRNA:   3'- cAAUGUUg--UCGCCG----UugCACGUC--UGG- -5'
250 5' -50.6 AC_000008.1 + 19556 0.68 0.733038
Target:  5'- -cUGCuGCGGCGGCcgcuCGUcGCcuGGACCu -3'
miRNA:   3'- caAUGuUGUCGCCGuu--GCA-CG--UCUGG- -5'
250 5' -50.6 AC_000008.1 + 23896 0.68 0.733038
Target:  5'- ----aGGCGGCGGCGACGgggacGgGGACg -3'
miRNA:   3'- caaugUUGUCGCCGUUGCa----CgUCUGg -5'
250 5' -50.6 AC_000008.1 + 29394 0.68 0.721685
Target:  5'- --cGCAAgGGCGGCcGCcucUGCuGGACCa -3'
miRNA:   3'- caaUGUUgUCGCCGuUGc--ACG-UCUGG- -5'
250 5' -50.6 AC_000008.1 + 19835 0.68 0.71023
Target:  5'- aUUACAACAGCacgGGUAauAUGgguguucugGCGGGCCa -3'
miRNA:   3'- cAAUGUUGUCG---CCGU--UGCa--------CGUCUGG- -5'
250 5' -50.6 AC_000008.1 + 16378 0.68 0.698687
Target:  5'- -----cGCAGgGGCAACGUGUauugGGugCg -3'
miRNA:   3'- caauguUGUCgCCGUUGCACG----UCugG- -5'
250 5' -50.6 AC_000008.1 + 12217 0.68 0.698687
Target:  5'- --gGCAACGuCGGCGGCGUGgAGGa- -3'
miRNA:   3'- caaUGUUGUcGCCGUUGCACgUCUgg -5'
250 5' -50.6 AC_000008.1 + 20164 0.69 0.687071
Target:  5'- uGUUGC-GCAGCGGUAGCGUcCcguGAUCu -3'
miRNA:   3'- -CAAUGuUGUCGCCGUUGCAcGu--CUGG- -5'
250 5' -50.6 AC_000008.1 + 16501 0.69 0.687071
Target:  5'- ---cCAGCGGCGGCGGCGcGCA-ACg -3'
miRNA:   3'- caauGUUGUCGCCGUUGCaCGUcUGg -5'
250 5' -50.6 AC_000008.1 + 19197 0.69 0.663669
Target:  5'- ----gGGC-GCGGUAGCGUGCAGcaguuCCa -3'
miRNA:   3'- caaugUUGuCGCCGUUGCACGUCu----GG- -5'
250 5' -50.6 AC_000008.1 + 15109 0.69 0.651911
Target:  5'- --gGCAGCcGCGGCAA--UGCAG-CCg -3'
miRNA:   3'- caaUGUUGuCGCCGUUgcACGUCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.