miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2500 5' -59.9 NC_001454.1 + 15121 0.67 0.259666
Target:  5'- gAGCGGCAGuCaUGGCGGCAGUagGCc- -3'
miRNA:   3'- -UCGUCGUCuGcGCCGUCGUCGa-CGuc -5'
2500 5' -59.9 NC_001454.1 + 11425 0.67 0.23979
Target:  5'- cGGUGGCGGACG-GGUcGCAGCaGguGa -3'
miRNA:   3'- -UCGUCGUCUGCgCCGuCGUCGaCguC- -5'
2500 5' -59.9 NC_001454.1 + 8161 0.68 0.225425
Target:  5'- cGGUAGCGGcACGUcggcguggagcucgGGUAGCGGUUGguGc -3'
miRNA:   3'- -UCGUCGUC-UGCG--------------CCGUCGUCGACguC- -5'
2500 5' -59.9 NC_001454.1 + 17482 0.68 0.2212
Target:  5'- gGGCGGCGGGCGgggguagccaCGGCAaCAGUggggGCGGu -3'
miRNA:   3'- -UCGUCGUCUGC----------GCCGUcGUCGa---CGUC- -5'
2500 5' -59.9 NC_001454.1 + 28146 0.68 0.2212
Target:  5'- gAGcCGGUGGGgGCGGUGGgGGCUGUAa -3'
miRNA:   3'- -UC-GUCGUCUgCGCCGUCgUCGACGUc -5'
2500 5' -59.9 NC_001454.1 + 9775 0.69 0.192953
Target:  5'- uGGUAGCcaacaaggaAGugG-GGCGGCGGCUcGCGGu -3'
miRNA:   3'- -UCGUCG---------UCugCgCCGUCGUCGA-CGUC- -5'
2500 5' -59.9 NC_001454.1 + 10535 0.69 0.182568
Target:  5'- cGCAGguuuUAcGCGgGGCAGgAGCUGCGGg -3'
miRNA:   3'- uCGUC----GUcUGCgCCGUCgUCGACGUC- -5'
2500 5' -59.9 NC_001454.1 + 16373 0.69 0.182568
Target:  5'- cGGCGGCGGACagagcgacgacgGCGGguGgAGCgagUGCGGc -3'
miRNA:   3'- -UCGUCGUCUG------------CGCCguCgUCG---ACGUC- -5'
2500 5' -59.9 NC_001454.1 + 9894 0.7 0.154329
Target:  5'- gAGcCAGguGAUGcCGGCGGCGGUagugGCGGc -3'
miRNA:   3'- -UC-GUCguCUGC-GCCGUCGUCGa---CGUC- -5'
2500 5' -59.9 NC_001454.1 + 10346 0.7 0.141745
Target:  5'- uAGUGGgGGGCGgGaGCGGCGGCUGUg- -3'
miRNA:   3'- -UCGUCgUCUGCgC-CGUCGUCGACGuc -5'
2500 5' -59.9 NC_001454.1 + 6450 0.71 0.137763
Target:  5'- cAGCGGuCGGACcuaGGCGGCAGCUuGCuGg -3'
miRNA:   3'- -UCGUC-GUCUGcg-CCGUCGUCGA-CGuC- -5'
2500 5' -59.9 NC_001454.1 + 32071 0.72 0.109437
Target:  5'- uGCGGUgcugcgcucgucGGACGCGGCGGCuGCUGg-- -3'
miRNA:   3'- uCGUCG------------UCUGCGCCGUCGuCGACguc -5'
2500 5' -59.9 NC_001454.1 + 3466 1.07 0.000176
Target:  5'- cAGCAGCAGACGCGGCAGCAGCUGCAGc -3'
miRNA:   3'- -UCGUCGUCUGCGCCGUCGUCGACGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.