miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25021 3' -47.3 NC_005309.1 + 342815 0.66 0.999999
Target:  5'- -uUACUuuUACUUCUuc-AUCAUCCUCCu -3'
miRNA:   3'- ucAUGG--AUGAAGAuuuUAGUGGGGGG- -5'
25021 3' -47.3 NC_005309.1 + 357744 0.67 0.999997
Target:  5'- cGGUGCCUGCUaCaaaGAAGUCcugaugccGCCUUCCa -3'
miRNA:   3'- -UCAUGGAUGAaGa--UUUUAG--------UGGGGGG- -5'
25021 3' -47.3 NC_005309.1 + 2110 0.67 0.999997
Target:  5'- cGGUGCCUGCUaCaaaGAAGUCcugaugccGCCUUCCa -3'
miRNA:   3'- -UCAUGGAUGAaGa--UUUUAG--------UGGGGGG- -5'
25021 3' -47.3 NC_005309.1 + 1731 0.67 0.999996
Target:  5'- cGGUugUUGCUauaaaugagaaauuUgUGAAAggUACCCCCCu -3'
miRNA:   3'- -UCAugGAUGA--------------AgAUUUUa-GUGGGGGG- -5'
25021 3' -47.3 NC_005309.1 + 358123 0.67 0.999996
Target:  5'- cGGUugUUGCUauaaaugagaaauuUgUGAAAggUACCCCCCu -3'
miRNA:   3'- -UCAugGAUGA--------------AgAUUUUa-GUGGGGGG- -5'
25021 3' -47.3 NC_005309.1 + 132266 0.67 0.999994
Target:  5'- --cACCU-CcUCUAAgaccuaugcGAUCACCCCCa -3'
miRNA:   3'- ucaUGGAuGaAGAUU---------UUAGUGGGGGg -5'
25021 3' -47.3 NC_005309.1 + 23112 0.67 0.999994
Target:  5'- cGUACCUAUUUaUUGAGuuuacAUCAgCCCCg -3'
miRNA:   3'- uCAUGGAUGAA-GAUUU-----UAGUgGGGGg -5'
25021 3' -47.3 NC_005309.1 + 349889 0.68 0.999989
Target:  5'- cGGUugUUaucuguuaugcgGCUUCUuauGUCACCCCUa -3'
miRNA:   3'- -UCAugGA------------UGAAGAuuuUAGUGGGGGg -5'
25021 3' -47.3 NC_005309.1 + 282773 0.68 0.999985
Target:  5'- cGGUAUCUACUUCUGAaaccaugcagcGAUCAUuuUCa -3'
miRNA:   3'- -UCAUGGAUGAAGAUU-----------UUAGUGggGGg -5'
25021 3' -47.3 NC_005309.1 + 174623 0.68 0.99998
Target:  5'- -cUACaUACUUCUAAAAUUAgUCUCCCg -3'
miRNA:   3'- ucAUGgAUGAAGAUUUUAGU-GGGGGG- -5'
25021 3' -47.3 NC_005309.1 + 18697 0.68 0.999973
Target:  5'- cGUAgauCCUACUUCUAccAUUACCUCUUc -3'
miRNA:   3'- uCAU---GGAUGAAGAUuuUAGUGGGGGG- -5'
25021 3' -47.3 NC_005309.1 + 137345 0.73 0.994638
Target:  5'- uAGUAgCUGCUUCUGGGAUuauagCAUCUCCUa -3'
miRNA:   3'- -UCAUgGAUGAAGAUUUUA-----GUGGGGGG- -5'
25021 3' -47.3 NC_005309.1 + 214318 0.73 0.994638
Target:  5'- cGGUACCUGCUUC-AucAUCAgCCUUCa -3'
miRNA:   3'- -UCAUGGAUGAAGaUuuUAGUgGGGGG- -5'
25021 3' -47.3 NC_005309.1 + 197307 0.83 0.754605
Target:  5'- uGUACCcACUUCUAAAAUCACCCggCUCa -3'
miRNA:   3'- uCAUGGaUGAAGAUUUUAGUGGG--GGG- -5'
25021 3' -47.3 NC_005309.1 + 258200 0.96 0.236545
Target:  5'- uAGUACCUACUUCUAAAAUCACCCggCCg -3'
miRNA:   3'- -UCAUGGAUGAAGAUUUUAGUGGGg-GG- -5'
25021 3' -47.3 NC_005309.1 + 205409 1 0.142979
Target:  5'- cAGUACCUACcUCUAAAAUCACCCCCUu -3'
miRNA:   3'- -UCAUGGAUGaAGAUUUUAGUGGGGGG- -5'
25021 3' -47.3 NC_005309.1 + 260372 1.04 0.093932
Target:  5'- uAGUACCUACUUCUAAAAUCACCCCgCg -3'
miRNA:   3'- -UCAUGGAUGAAGAUUUUAGUGGGGgG- -5'
25021 3' -47.3 NC_005309.1 + 201101 1.13 0.028413
Target:  5'- cAGUACCUACUUCUAAAAUCACCCCCCc -3'
miRNA:   3'- -UCAUGGAUGAAGAUUUUAGUGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.