miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25022 3' -46.6 NC_005309.1 + 161142 0.66 1
Target:  5'- cAGUACUUACUUCauuagacgaAGAAUCugCCaGUu -3'
miRNA:   3'- -UCAUGGAUGAAGa--------UUUUAGugGGcCG- -5'
25022 3' -46.6 NC_005309.1 + 143479 0.66 1
Target:  5'- cAGUAUCUACaUUUuuGAUCAUUacaGGCg -3'
miRNA:   3'- -UCAUGGAUGaAGAuuUUAGUGGg--CCG- -5'
25022 3' -46.6 NC_005309.1 + 137345 0.66 1
Target:  5'- uAGUAgCUGCUUCUGGGAUUAUa--GCa -3'
miRNA:   3'- -UCAUgGAUGAAGAUUUUAGUGggcCG- -5'
25022 3' -46.6 NC_005309.1 + 214318 0.66 1
Target:  5'- cGGUACCUGCUUC----AUCAUCa-GCc -3'
miRNA:   3'- -UCAUGGAUGAAGauuuUAGUGGgcCG- -5'
25022 3' -46.6 NC_005309.1 + 296392 0.67 0.999999
Target:  5'- uGUAUCUGcCUUUUGcGAUaUAUCCGGCa -3'
miRNA:   3'- uCAUGGAU-GAAGAUuUUA-GUGGGCCG- -5'
25022 3' -46.6 NC_005309.1 + 18697 0.67 0.999999
Target:  5'- cGUAgauCCUACUUCUAccAUUACCUcuucuuuaGGCu -3'
miRNA:   3'- uCAU---GGAUGAAGAUuuUAGUGGG--------CCG- -5'
25022 3' -46.6 NC_005309.1 + 64308 0.68 0.999997
Target:  5'- gAGUACUUACUUgUAuacuuauaccAUCAggUCCGGCa -3'
miRNA:   3'- -UCAUGGAUGAAgAUuu--------UAGU--GGGCCG- -5'
25022 3' -46.6 NC_005309.1 + 257779 0.68 0.999996
Target:  5'- aAGUAUggAaag-UAAAAUCACCCGGCc -3'
miRNA:   3'- -UCAUGgaUgaagAUUUUAGUGGGCCG- -5'
25022 3' -46.6 NC_005309.1 + 87477 0.68 0.999992
Target:  5'- aGGUACCUACaucucaguUUCUAuauccGAGUUACgguaCGGCa -3'
miRNA:   3'- -UCAUGGAUG--------AAGAU-----UUUAGUGg---GCCG- -5'
25022 3' -46.6 NC_005309.1 + 298722 0.69 0.999985
Target:  5'- cGUAUCUGCUUC-GAAAUUuggauACuuGGCu -3'
miRNA:   3'- uCAUGGAUGAAGaUUUUAG-----UGggCCG- -5'
25022 3' -46.6 NC_005309.1 + 135489 0.69 0.999979
Target:  5'- --gGCC-ACUUCUaGAGAUCACUgugCGGCu -3'
miRNA:   3'- ucaUGGaUGAAGA-UUUUAGUGG---GCCG- -5'
25022 3' -46.6 NC_005309.1 + 207420 0.69 0.999972
Target:  5'- cGUACCaaaACUgUUGGAGUCcauACCCGGUa -3'
miRNA:   3'- uCAUGGa--UGAaGAUUUUAG---UGGGCCG- -5'
25022 3' -46.6 NC_005309.1 + 156605 0.69 0.999962
Target:  5'- -aUACUUuuugagaACUUCUAAAuauUCAUCCGGUg -3'
miRNA:   3'- ucAUGGA-------UGAAGAUUUu--AGUGGGCCG- -5'
25022 3' -46.6 NC_005309.1 + 274134 0.71 0.999548
Target:  5'- uAGUACCUAUUU----GAUCugCCGGg -3'
miRNA:   3'- -UCAUGGAUGAAgauuUUAGugGGCCg -5'
25022 3' -46.6 NC_005309.1 + 196885 0.71 0.999548
Target:  5'- cAGUGuuUGgaauaUAAAAUCACCCGGCu -3'
miRNA:   3'- -UCAUggAUgaag-AUUUUAGUGGGCCG- -5'
25022 3' -46.6 NC_005309.1 + 5512 0.74 0.995216
Target:  5'- uGGUGCCguUGCUUCU---GUUGCCCGuGCg -3'
miRNA:   3'- -UCAUGG--AUGAAGAuuuUAGUGGGC-CG- -5'
25022 3' -46.6 NC_005309.1 + 354342 0.74 0.995216
Target:  5'- uGGUGCCguUGCUUCU---GUUGCCCGuGCg -3'
miRNA:   3'- -UCAUGG--AUGAAGAuuuUAGUGGGC-CG- -5'
25022 3' -46.6 NC_005309.1 + 282773 0.74 0.994452
Target:  5'- cGGUAUCUACUUCUGAAAcCAUgCaGCg -3'
miRNA:   3'- -UCAUGGAUGAAGAUUUUaGUGgGcCG- -5'
25022 3' -46.6 NC_005309.1 + 174623 0.75 0.991553
Target:  5'- -cUACaUACUUCUAAAAUUAgucuCCCGGCa -3'
miRNA:   3'- ucAUGgAUGAAGAUUUUAGU----GGGCCG- -5'
25022 3' -46.6 NC_005309.1 + 205409 0.85 0.719904
Target:  5'- cAGUACCUACcUCUAAAAUCACCCc-- -3'
miRNA:   3'- -UCAUGGAUGaAGAUUUUAGUGGGccg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.