miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25023 3' -46.6 NC_005309.1 + 174623 0.66 1
Target:  5'- -cUACaUACUUCUAAAAUUAgucuCCCgGCa -3'
miRNA:   3'- ucAUGgAUGAAGAUUUUAGU----GGGgCG- -5'
25023 3' -46.6 NC_005309.1 + 191135 0.67 0.999999
Target:  5'- cAGUACUcuUUUCaAGGAcUCGCUCCGCg -3'
miRNA:   3'- -UCAUGGauGAAGaUUUU-AGUGGGGCG- -5'
25023 3' -46.6 NC_005309.1 + 18697 0.67 0.999999
Target:  5'- cGUAgauCCUACUUCUAccAUUACCUCu- -3'
miRNA:   3'- uCAU---GGAUGAAGAUuuUAGUGGGGcg -5'
25023 3' -46.6 NC_005309.1 + 214318 0.68 0.999994
Target:  5'- cGGUACCUGCUUC-AucAUCAgCCUuCa -3'
miRNA:   3'- -UCAUGGAUGAAGaUuuUAGUgGGGcG- -5'
25023 3' -46.6 NC_005309.1 + 135489 0.68 0.999989
Target:  5'- --gGCC-ACUUCUaGAGAUCACUgUGCg -3'
miRNA:   3'- ucaUGGaUGAAGA-UUUUAGUGGgGCG- -5'
25023 3' -46.6 NC_005309.1 + 137345 0.69 0.999979
Target:  5'- uAGUAgCUGCUUCUGGGAUUAUa--GCa -3'
miRNA:   3'- -UCAUgGAUGAAGAUUUUAGUGgggCG- -5'
25023 3' -46.6 NC_005309.1 + 237963 0.69 0.999972
Target:  5'- cAGUACCUGgUUCUAAA---GCCgCGUu -3'
miRNA:   3'- -UCAUGGAUgAAGAUUUuagUGGgGCG- -5'
25023 3' -46.6 NC_005309.1 + 5512 0.69 0.999951
Target:  5'- uGGUGCCguUGCUUCUG----UugCCCGUg -3'
miRNA:   3'- -UCAUGG--AUGAAGAUuuuaGugGGGCG- -5'
25023 3' -46.6 NC_005309.1 + 354342 0.69 0.999951
Target:  5'- uGGUGCCguUGCUUCUG----UugCCCGUg -3'
miRNA:   3'- -UCAUGG--AUGAAGAUuuuaGugGGGCG- -5'
25023 3' -46.6 NC_005309.1 + 23112 0.7 0.999935
Target:  5'- cGUACCUAUUUaUUGAGuuuacAUCAgCCCCGUu -3'
miRNA:   3'- uCAUGGAUGAA-GAUUU-----UAGU-GGGGCG- -5'
25023 3' -46.6 NC_005309.1 + 141455 0.7 0.99989
Target:  5'- --cGCCUGCUaCcAAAAUCAUCCUGUu -3'
miRNA:   3'- ucaUGGAUGAaGaUUUUAGUGGGGCG- -5'
25023 3' -46.6 NC_005309.1 + 347899 0.7 0.999855
Target:  5'- -aUACCUACUUCUAucguaugGAAUCGCUauugaCGUa -3'
miRNA:   3'- ucAUGGAUGAAGAU-------UUUAGUGGg----GCG- -5'
25023 3' -46.6 NC_005309.1 + 10175 0.71 0.999819
Target:  5'- gAGUcCCUACUcgUUUuacGUCGCUCCGCg -3'
miRNA:   3'- -UCAuGGAUGA--AGAuuuUAGUGGGGCG- -5'
25023 3' -46.6 NC_005309.1 + 259946 0.71 0.999637
Target:  5'- aAGUAa-UAUUUggaguaUAAAAUCACCCCGCg -3'
miRNA:   3'- -UCAUggAUGAAg-----AUUUUAGUGGGGCG- -5'
25023 3' -46.6 NC_005309.1 + 354162 0.72 0.999311
Target:  5'- uGUAUCUGgaUCUG--GUCACCCUGUu -3'
miRNA:   3'- uCAUGGAUgaAGAUuuUAGUGGGGCG- -5'
25023 3' -46.6 NC_005309.1 + 5692 0.72 0.999311
Target:  5'- uGUAUCUGgaUCUG--GUCACCCUGUu -3'
miRNA:   3'- uCAUGGAUgaAGAUuuUAGUGGGGCG- -5'
25023 3' -46.6 NC_005309.1 + 253312 0.72 0.999311
Target:  5'- --cAUUUACUUCUAAAAUCAUUuuGCc -3'
miRNA:   3'- ucaUGGAUGAAGAUUUUAGUGGggCG- -5'
25023 3' -46.6 NC_005309.1 + 282773 0.73 0.998504
Target:  5'- cGGUAUCUACUUCUGAAAcCAUgCaGCg -3'
miRNA:   3'- -UCAUGGAUGAAGAUUUUaGUGgGgCG- -5'
25023 3' -46.6 NC_005309.1 + 205409 0.92 0.395274
Target:  5'- cAGUACCUACcUCUAAAAUCACCCCc- -3'
miRNA:   3'- -UCAUGGAUGaAGAUUUUAGUGGGGcg -5'
25023 3' -46.6 NC_005309.1 + 197307 0.93 0.370151
Target:  5'- uGUACCcACUUCUAAAAUCACCCgGCu -3'
miRNA:   3'- uCAUGGaUGAAGAUUUUAGUGGGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.