Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25027 | 3' | -48.6 | NC_005336.1 | + | 138874 | 1.06 | 0.018076 |
Target: 5'- cUUGUGCGAAAACUUUUCGGAGGAGCGc -3' miRNA: 3'- -AACACGCUUUUGAAAAGCCUCCUCGC- -5' |
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25027 | 3' | -48.6 | NC_005336.1 | + | 138874 | 1.06 | 0.018076 |
Target: 5'- cUUGUGCGAAAACUUUUCGGAGGAGCGc -3' miRNA: 3'- -AACACGCUUUUGAAAAGCCUCCUCGC- -5' |
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25027 | 3' | -48.6 | NC_005336.1 | + | 139097 | 0.75 | 0.814575 |
Target: 5'- ------aAAAACUUUUCGGAGGAGCGc -3' miRNA: 3'- aacacgcUUUUGAAAAGCCUCCUCGC- -5' |
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25027 | 3' | -48.6 | NC_005336.1 | + | 139097 | 0.75 | 0.814575 |
Target: 5'- ------aAAAACUUUUCGGAGGAGCGc -3' miRNA: 3'- aacacgcUUUUGAAAAGCCUCCUCGC- -5' |
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25027 | 3' | -48.6 | NC_005336.1 | + | 10166 | 0.74 | 0.87452 |
Target: 5'- -cGUGCGAGAGCaccUCGGugucGGGGCGc -3' miRNA: 3'- aaCACGCUUUUGaaaAGCCu---CCUCGC- -5' |
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25027 | 3' | -48.6 | NC_005336.1 | + | 36765 | 0.71 | 0.948544 |
Target: 5'- -cGUGCGGAAGCUgccgUCGGAcuuGCGg -3' miRNA: 3'- aaCACGCUUUUGAaa--AGCCUccuCGC- -5' |
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25027 | 3' | -48.6 | NC_005336.1 | + | 103389 | 0.7 | 0.968042 |
Target: 5'- -gGUcGCGAGcGCcUUUCGcGAGGAGUGg -3' miRNA: 3'- aaCA-CGCUUuUGaAAAGC-CUCCUCGC- -5' |
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25027 | 3' | -48.6 | NC_005336.1 | + | 121822 | 0.7 | 0.968042 |
Target: 5'- ---gGCGAAGaggagcACUgcUCGGAGGAGUGc -3' miRNA: 3'- aacaCGCUUU------UGAaaAGCCUCCUCGC- -5' |
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25027 | 3' | -48.6 | NC_005336.1 | + | 130411 | 0.7 | 0.9712 |
Target: 5'- -cGUaGCGGAGuGCUUagCGGAGGuAGCGg -3' miRNA: 3'- aaCA-CGCUUU-UGAAaaGCCUCC-UCGC- -5' |
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25027 | 3' | -48.6 | NC_005336.1 | + | 23602 | 0.69 | 0.976834 |
Target: 5'- -aGUGCGAGA----UUUGGAGG-GCGg -3' miRNA: 3'- aaCACGCUUUugaaAAGCCUCCuCGC- -5' |
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25027 | 3' | -48.6 | NC_005336.1 | + | 5914 | 0.69 | 0.981393 |
Target: 5'- -aGUGCGGcgGCg--UCGGGGGcguccgcGGCGg -3' miRNA: 3'- aaCACGCUuuUGaaaAGCCUCC-------UCGC- -5' |
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25027 | 3' | -48.6 | NC_005336.1 | + | 138419 | 0.69 | 0.985611 |
Target: 5'- --uUGUGAAAACUcUUCGGAGGucAGuCGa -3' miRNA: 3'- aacACGCUUUUGAaAAGCCUCC--UC-GC- -5' |
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25027 | 3' | -48.6 | NC_005336.1 | + | 138419 | 0.69 | 0.985611 |
Target: 5'- --uUGUGAAAACUcUUCGGAGGucAGuCGa -3' miRNA: 3'- aacACGCUUUUGAaAAGCCUCC--UC-GC- -5' |
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25027 | 3' | -48.6 | NC_005336.1 | + | 93148 | 0.68 | 0.988908 |
Target: 5'- -cGUGCugguGAAGCUUggcuucUCGGAGGuGCGc -3' miRNA: 3'- aaCACGc---UUUUGAAa-----AGCCUCCuCGC- -5' |
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25027 | 3' | -48.6 | NC_005336.1 | + | 25312 | 0.68 | 0.988908 |
Target: 5'- ---cGCGAGAACgcgaugUCGGAGGcGCc -3' miRNA: 3'- aacaCGCUUUUGaaa---AGCCUCCuCGc -5' |
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25027 | 3' | -48.6 | NC_005336.1 | + | 110790 | 0.68 | 0.988908 |
Target: 5'- aUGUGCGAGAACUgcgCGaGcAGGAuGCc -3' miRNA: 3'- aACACGCUUUUGAaaaGC-C-UCCU-CGc -5' |
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25027 | 3' | -48.6 | NC_005336.1 | + | 86535 | 0.67 | 0.993723 |
Target: 5'- cUUGUGCGGAAACaugcUCGcGAGGcGCc -3' miRNA: 3'- -AACACGCUUUUGaaa-AGC-CUCCuCGc -5' |
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25027 | 3' | -48.6 | NC_005336.1 | + | 77758 | 0.67 | 0.995402 |
Target: 5'- ----cCGAAcAACUUUgCGGAGGAGCa -3' miRNA: 3'- aacacGCUU-UUGAAAaGCCUCCUCGc -5' |
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25027 | 3' | -48.6 | NC_005336.1 | + | 132724 | 0.67 | 0.995894 |
Target: 5'- gUGUGCGGAGACgugcgcgugcugcUGGAGGcuGGCGc -3' miRNA: 3'- aACACGCUUUUGaaaa---------GCCUCC--UCGC- -5' |
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25027 | 3' | -48.6 | NC_005336.1 | + | 46181 | 0.67 | 0.996092 |
Target: 5'- gUGUGCGAAGACUUgcUCGGcaucgacAGCGu -3' miRNA: 3'- aACACGCUUUUGAAa-AGCCucc----UCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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