miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25027 5' -56 NC_005336.1 + 71591 0.66 0.871763
Target:  5'- --gGCCUCCuCCGCGcgcAGCguccaCGCGGAGg -3'
miRNA:   3'- cagCGGAGG-GGCGU---UUGa----GCGUCUUg -5'
25027 5' -56 NC_005336.1 + 75094 0.66 0.871763
Target:  5'- -aCGUCUCCgCCgGCGAACUCGaagucCAGGAa -3'
miRNA:   3'- caGCGGAGG-GG-CGUUUGAGC-----GUCUUg -5'
25027 5' -56 NC_005336.1 + 50391 0.66 0.871763
Target:  5'- cGUCuGCCUCgucgCCCGCcGGCUgCGCGGcgGGCg -3'
miRNA:   3'- -CAG-CGGAG----GGGCGuUUGA-GCGUC--UUG- -5'
25027 5' -56 NC_005336.1 + 109313 0.66 0.871763
Target:  5'- --gGCCgCCgCCGCGAggGCcaCGCAGAGCg -3'
miRNA:   3'- cagCGGaGG-GGCGUU--UGa-GCGUCUUG- -5'
25027 5' -56 NC_005336.1 + 92779 0.66 0.871763
Target:  5'- -cCGCCUCCuucuCCGCGAccacGCcgUCGCuGGGCg -3'
miRNA:   3'- caGCGGAGG----GGCGUU----UG--AGCGuCUUG- -5'
25027 5' -56 NC_005336.1 + 68198 0.66 0.871763
Target:  5'- cGUC-CCUCCgCGUGGACgcugcgCGCGGAGg -3'
miRNA:   3'- -CAGcGGAGGgGCGUUUGa-----GCGUCUUg -5'
25027 5' -56 NC_005336.1 + 26985 0.66 0.871763
Target:  5'- -cCGCCUCCUCGagguccGCgUCGgAGAGCa -3'
miRNA:   3'- caGCGGAGGGGCguu---UG-AGCgUCUUG- -5'
25027 5' -56 NC_005336.1 + 139719 0.66 0.87102
Target:  5'- --aGCCUCuUCCGCGGAgUCGCGuuucugcGGACg -3'
miRNA:   3'- cagCGGAG-GGGCGUUUgAGCGU-------CUUG- -5'
25027 5' -56 NC_005336.1 + 139719 0.66 0.87102
Target:  5'- --aGCCUCuUCCGCGGAgUCGCGuuucugcGGACg -3'
miRNA:   3'- cagCGGAG-GGGCGUUUgAGCGU-------CUUG- -5'
25027 5' -56 NC_005336.1 + 115360 0.66 0.870274
Target:  5'- -aCGCCgguggagagcggCUCCGCGAuAUUCGCGGAGg -3'
miRNA:   3'- caGCGGa-----------GGGGCGUU-UGAGCGUCUUg -5'
25027 5' -56 NC_005336.1 + 61790 0.66 0.864232
Target:  5'- aUCGCga--CCGCGAgccggaucugguGCUCGCAGGGCg -3'
miRNA:   3'- cAGCGgaggGGCGUU------------UGAGCGUCUUG- -5'
25027 5' -56 NC_005336.1 + 73280 0.66 0.864232
Target:  5'- -gCGCCcgCaCCCGC-AGCUCGUGGAc- -3'
miRNA:   3'- caGCGGa-G-GGGCGuUUGAGCGUCUug -5'
25027 5' -56 NC_005336.1 + 14362 0.66 0.856486
Target:  5'- -cCGCgagcagCCCCGCGGcgcGgUCGCGGGGCa -3'
miRNA:   3'- caGCGga----GGGGCGUU---UgAGCGUCUUG- -5'
25027 5' -56 NC_005336.1 + 16700 0.66 0.856486
Target:  5'- -gCGCCUCCCCGa--GCUC-CucGAGCg -3'
miRNA:   3'- caGCGGAGGGGCguuUGAGcGu-CUUG- -5'
25027 5' -56 NC_005336.1 + 1022 0.66 0.856486
Target:  5'- -cCGCUccgcUCCCCGCGG--UCGCGGGcgGCg -3'
miRNA:   3'- caGCGG----AGGGGCGUUugAGCGUCU--UG- -5'
25027 5' -56 NC_005336.1 + 34756 0.66 0.856486
Target:  5'- -gCGCCgcgaugUCgCCGCAGuuCUCGCAGAcgaGCa -3'
miRNA:   3'- caGCGG------AGgGGCGUUu-GAGCGUCU---UG- -5'
25027 5' -56 NC_005336.1 + 1022 0.66 0.856486
Target:  5'- -cCGCUccgcUCCCCGCGG--UCGCGGGcgGCg -3'
miRNA:   3'- caGCGG----AGGGGCGUUugAGCGUCU--UG- -5'
25027 5' -56 NC_005336.1 + 20416 0.66 0.856486
Target:  5'- cUCGCCcacgCCCaCGCGGAuCUCGCgcuGGAAg -3'
miRNA:   3'- cAGCGGa---GGG-GCGUUU-GAGCG---UCUUg -5'
25027 5' -56 NC_005336.1 + 6457 0.66 0.8557
Target:  5'- -cCGCCUCCggcgagaucgaguCCGCGGACcCGCgcgccagagGGAACa -3'
miRNA:   3'- caGCGGAGG-------------GGCGUUUGaGCG---------UCUUG- -5'
25027 5' -56 NC_005336.1 + 47963 0.67 0.848532
Target:  5'- --gGCCUCCCgGCGAAgUCGCc---- -3'
miRNA:   3'- cagCGGAGGGgCGUUUgAGCGucuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.