miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25028 3' -53.7 NC_005336.1 + 138118 1.07 0.005361
Target:  5'- cACUCGCUCGCUCGGAGUAAGAGAGUAg -3'
miRNA:   3'- -UGAGCGAGCGAGCCUCAUUCUCUCAU- -5'
25028 3' -53.7 NC_005336.1 + 138118 1.07 0.005361
Target:  5'- cACUCGCUCGCUCGGAGUAAGAGAGUAg -3'
miRNA:   3'- -UGAGCGAGCGAGCCUCAUUCUCUCAU- -5'
25028 3' -53.7 NC_005336.1 + 136987 0.97 0.025714
Target:  5'- aACUCGCUCGCUCGGAGUAAGAGAa-- -3'
miRNA:   3'- -UGAGCGAGCGAGCCUCAUUCUCUcau -5'
25028 3' -53.7 NC_005336.1 + 136987 0.97 0.025714
Target:  5'- aACUCGCUCGCUCGGAGUAAGAGAa-- -3'
miRNA:   3'- -UGAGCGAGCGAGCCUCAUUCUCUcau -5'
25028 3' -53.7 NC_005336.1 + 137985 0.95 0.03047
Target:  5'- cACUCaCUCGCUCGGAGUGAGAGAGUAg -3'
miRNA:   3'- -UGAGcGAGCGAGCCUCAUUCUCUCAU- -5'
25028 3' -53.7 NC_005336.1 + 137985 0.95 0.03047
Target:  5'- cACUCaCUCGCUCGGAGUGAGAGAGUAg -3'
miRNA:   3'- -UGAGcGAGCGAGCCUCAUUCUCUCAU- -5'
25028 3' -53.7 NC_005336.1 + 138033 0.94 0.034988
Target:  5'- cACUCGCUCGCcacucacUCGGAGUGAGAGAGUAg -3'
miRNA:   3'- -UGAGCGAGCG-------AGCCUCAUUCUCUCAU- -5'
25028 3' -53.7 NC_005336.1 + 138033 0.94 0.034988
Target:  5'- cACUCGCUCGCcacucacUCGGAGUGAGAGAGUAg -3'
miRNA:   3'- -UGAGCGAGCG-------AGCCUCAUUCUCUCAU- -5'
25028 3' -53.7 NC_005336.1 + 137726 0.91 0.058109
Target:  5'- cGCUCGCUCGCUCaGAGUAAGAGAGc- -3'
miRNA:   3'- -UGAGCGAGCGAGcCUCAUUCUCUCau -5'
25028 3' -53.7 NC_005336.1 + 137726 0.91 0.058109
Target:  5'- cGCUCGCUCGCUCaGAGUAAGAGAGc- -3'
miRNA:   3'- -UGAGCGAGCGAGcCUCAUUCUCUCau -5'
25028 3' -53.7 NC_005336.1 + 137431 0.86 0.125136
Target:  5'- aAC-CaCUCGCUCGGAGUAAGAGAGUAa -3'
miRNA:   3'- -UGaGcGAGCGAGCCUCAUUCUCUCAU- -5'
25028 3' -53.7 NC_005336.1 + 137431 0.86 0.125136
Target:  5'- aAC-CaCUCGCUCGGAGUAAGAGAGUAa -3'
miRNA:   3'- -UGaGcGAGCGAGCCUCAUUCUCUCAU- -5'
25028 3' -53.7 NC_005336.1 + 137503 0.85 0.135587
Target:  5'- cACUCGCUCaCUCaGAGUAAGAGAGUAg -3'
miRNA:   3'- -UGAGCGAGcGAGcCUCAUUCUCUCAU- -5'
25028 3' -53.7 NC_005336.1 + 137503 0.85 0.135587
Target:  5'- cACUCGCUCaCUCaGAGUAAGAGAGUAg -3'
miRNA:   3'- -UGAGCGAGcGAGcCUCAUUCUCUCAU- -5'
25028 3' -53.7 NC_005336.1 + 137139 0.74 0.54702
Target:  5'- cACUCGCUCGCucacucacUCGGGGcGAGAGAa-- -3'
miRNA:   3'- -UGAGCGAGCG--------AGCCUCaUUCUCUcau -5'
25028 3' -53.7 NC_005336.1 + 137139 0.74 0.54702
Target:  5'- cACUCGCUCGCucacucacUCGGGGcGAGAGAa-- -3'
miRNA:   3'- -UGAGCGAGCG--------AGCCUCaUUCUCUcau -5'
25028 3' -53.7 NC_005336.1 + 137264 0.73 0.62018
Target:  5'- cACUCaCUCaCUCGGAGUAAGAGAu-- -3'
miRNA:   3'- -UGAGcGAGcGAGCCUCAUUCUCUcau -5'
25028 3' -53.7 NC_005336.1 + 137264 0.73 0.62018
Target:  5'- cACUCaCUCaCUCGGAGUAAGAGAu-- -3'
miRNA:   3'- -UGAGcGAGcGAGCCUCAUUCUCUcau -5'
25028 3' -53.7 NC_005336.1 + 137054 0.72 0.683338
Target:  5'- cACUCuCUCaCUCGGGGUGAGAGAa-- -3'
miRNA:   3'- -UGAGcGAGcGAGCCUCAUUCUCUcau -5'
25028 3' -53.7 NC_005336.1 + 137054 0.72 0.683338
Target:  5'- cACUCuCUCaCUCGGGGUGAGAGAa-- -3'
miRNA:   3'- -UGAGcGAGcGAGCCUCAUUCUCUcau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.