miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25028 5' -55.4 NC_005336.1 + 462 0.72 0.602734
Target:  5'- ---cGCGGgcGGCCGCGCGUccGCGAc -3'
miRNA:   3'- caauCGUCaaCUGGCGCGCGcuCGCU- -5'
25028 5' -55.4 NC_005336.1 + 462 0.72 0.602734
Target:  5'- ---cGCGGgcGGCCGCGCGUccGCGAc -3'
miRNA:   3'- caauCGUCaaCUGGCGCGCGcuCGCU- -5'
25028 5' -55.4 NC_005336.1 + 1011 0.7 0.704975
Target:  5'- -cUGGCGGUcGGCCGCuccgcuccccgcgGuCGCGGGCGGc -3'
miRNA:   3'- caAUCGUCAaCUGGCG-------------C-GCGCUCGCU- -5'
25028 5' -55.4 NC_005336.1 + 1011 0.7 0.704975
Target:  5'- -cUGGCGGUcGGCCGCuccgcuccccgcgGuCGCGGGCGGc -3'
miRNA:   3'- caAUCGUCAaCUGGCG-------------C-GCGCUCGCU- -5'
25028 5' -55.4 NC_005336.1 + 3744 0.66 0.897464
Target:  5'- ---cGCGGUgagGgaaGCCgGCGCGCGGGCu- -3'
miRNA:   3'- caauCGUCAa--C---UGG-CGCGCGCUCGcu -5'
25028 5' -55.4 NC_005336.1 + 3744 0.66 0.897464
Target:  5'- ---cGCGGUgagGgaaGCCgGCGCGCGGGCu- -3'
miRNA:   3'- caauCGUCAa--C---UGG-CGCGCGCUCGcu -5'
25028 5' -55.4 NC_005336.1 + 5447 0.71 0.654598
Target:  5'- ---cGCGGUcGcCaCGCGCGCGAGCGc -3'
miRNA:   3'- caauCGUCAaCuG-GCGCGCGCUCGCu -5'
25028 5' -55.4 NC_005336.1 + 6012 0.67 0.876641
Target:  5'- -gUGGCAGcgcACCGCGCGCaugcucGCGAu -3'
miRNA:   3'- caAUCGUCaacUGGCGCGCGcu----CGCU- -5'
25028 5' -55.4 NC_005336.1 + 6207 0.76 0.382683
Target:  5'- --gAGCAGUUccgucggcGGCCgGCGCGCGAGCa- -3'
miRNA:   3'- caaUCGUCAA--------CUGG-CGCGCGCUCGcu -5'
25028 5' -55.4 NC_005336.1 + 6281 0.67 0.8538
Target:  5'- ---cGCGGUcacgcUGAgCGCGCGCGuGCu- -3'
miRNA:   3'- caauCGUCA-----ACUgGCGCGCGCuCGcu -5'
25028 5' -55.4 NC_005336.1 + 6996 0.68 0.829103
Target:  5'- cGUUGGUGGgcGAaaaGCGCGCGuGCGc -3'
miRNA:   3'- -CAAUCGUCaaCUgg-CGCGCGCuCGCu -5'
25028 5' -55.4 NC_005336.1 + 7341 0.68 0.820491
Target:  5'- --cAGCGGcUGccgcggcaGCCGCGgGCGuGCGAg -3'
miRNA:   3'- caaUCGUCaAC--------UGGCGCgCGCuCGCU- -5'
25028 5' -55.4 NC_005336.1 + 8183 0.66 0.910165
Target:  5'- --cGGCAGgaagaacaucGACCGCGCGgCGGGaaCGAc -3'
miRNA:   3'- caaUCGUCaa--------CUGGCGCGC-GCUC--GCU- -5'
25028 5' -55.4 NC_005336.1 + 8278 0.67 0.861628
Target:  5'- ---cGCGcaUGACgcuCGCGCGCGGGCGc -3'
miRNA:   3'- caauCGUcaACUG---GCGCGCGCUCGCu -5'
25028 5' -55.4 NC_005336.1 + 8895 0.74 0.463051
Target:  5'- --aGGCAGcgGGCCGCGCGCucGCGc -3'
miRNA:   3'- caaUCGUCaaCUGGCGCGCGcuCGCu -5'
25028 5' -55.4 NC_005336.1 + 9277 0.69 0.76543
Target:  5'- --cGGcCAGcc-GCCGCGCGCGGcGCGAg -3'
miRNA:   3'- caaUC-GUCaacUGGCGCGCGCU-CGCU- -5'
25028 5' -55.4 NC_005336.1 + 9302 0.66 0.903934
Target:  5'- --gAGCAGgcu-CCGCG-GCGGGCGc -3'
miRNA:   3'- caaUCGUCaacuGGCGCgCGCUCGCu -5'
25028 5' -55.4 NC_005336.1 + 9364 0.72 0.58209
Target:  5'- --gAGCAGc---CCGCGCGUGAGCGu -3'
miRNA:   3'- caaUCGUCaacuGGCGCGCGCUCGCu -5'
25028 5' -55.4 NC_005336.1 + 9545 0.71 0.644228
Target:  5'- --gGGCAGgcGgcgcaGCCGCGCGCGGcguucGCGAg -3'
miRNA:   3'- caaUCGUCaaC-----UGGCGCGCGCU-----CGCU- -5'
25028 5' -55.4 NC_005336.1 + 9615 0.69 0.746002
Target:  5'- ---cGCAGgagggGAagaUGCGCGCGAGCGc -3'
miRNA:   3'- caauCGUCaa---CUg--GCGCGCGCUCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.