Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25029 | 3' | -57.9 | NC_005336.1 | + | 137137 | 0.77 | 0.233806 |
Target: 5'- cUCACUCGCuCGCUCaCUCACUCGGg- -3' miRNA: 3'- uGGUGAGCGcGUGAG-GAGUGAGCCag -5' |
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25029 | 3' | -57.9 | NC_005336.1 | + | 76330 | 0.76 | 0.276224 |
Target: 5'- gGCCGCUgGCGCcCgUCCUC-CUUGGUCa -3' miRNA: 3'- -UGGUGAgCGCGuG-AGGAGuGAGCCAG- -5' |
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25029 | 3' | -57.9 | NC_005336.1 | + | 92461 | 0.75 | 0.310142 |
Target: 5'- aGCUGCUCGCGCGCaCCgugcagCACUCGGa- -3' miRNA: 3'- -UGGUGAGCGCGUGaGGa-----GUGAGCCag -5' |
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25029 | 3' | -57.9 | NC_005336.1 | + | 100983 | 0.73 | 0.430161 |
Target: 5'- gACCGCga--GCGCUCCUCGCU-GGUCu -3' miRNA: 3'- -UGGUGagcgCGUGAGGAGUGAgCCAG- -5' |
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25029 | 3' | -57.9 | NC_005336.1 | + | 100488 | 0.73 | 0.430161 |
Target: 5'- cGCCGCUCgguGCGCACcuUCCUCGCgcucgCGGa- -3' miRNA: 3'- -UGGUGAG---CGCGUG--AGGAGUGa----GCCag -5' |
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25029 | 3' | -57.9 | NC_005336.1 | + | 13801 | 0.72 | 0.466483 |
Target: 5'- gGCCACgCGCGCgaaggccgccaGCUCCUCGCgCGG-Ca -3' miRNA: 3'- -UGGUGaGCGCG-----------UGAGGAGUGaGCCaG- -5' |
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25029 | 3' | -57.9 | NC_005336.1 | + | 132598 | 0.7 | 0.570393 |
Target: 5'- -aCugUCGCGCgagcucuaucacgaGCUCCg-ACUCGGUCu -3' miRNA: 3'- ugGugAGCGCG--------------UGAGGagUGAGCCAG- -5' |
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25029 | 3' | -57.9 | NC_005336.1 | + | 32350 | 0.7 | 0.58349 |
Target: 5'- cGCCGCgCGCGC-CUCCgucaCGCUCGcGUUc -3' miRNA: 3'- -UGGUGaGCGCGuGAGGa---GUGAGC-CAG- -5' |
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25029 | 3' | -57.9 | NC_005336.1 | + | 138032 | 0.68 | 0.715001 |
Target: 5'- -aCACUCGCuCGC-CaCUCACUCGGa- -3' miRNA: 3'- ugGUGAGCGcGUGaG-GAGUGAGCCag -5' |
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25029 | 3' | -57.9 | NC_005336.1 | + | 136243 | 0.68 | 0.695064 |
Target: 5'- gGCgCGCUCGCGCugguggcggcggGCUUCgCGCUCGG-Cg -3' miRNA: 3'- -UG-GUGAGCGCG------------UGAGGaGUGAGCCaG- -5' |
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25029 | 3' | -57.9 | NC_005336.1 | + | 128266 | 0.68 | 0.682997 |
Target: 5'- gGCCGCgcgcguggagcgCGUGCGCcgcaagUCCUCGCU-GGUCg -3' miRNA: 3'- -UGGUGa-----------GCGCGUG------AGGAGUGAgCCAG- -5' |
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25029 | 3' | -57.9 | NC_005336.1 | + | 8906 | 0.69 | 0.664789 |
Target: 5'- cGCgCGCUCGCGCAC-CCagaagCGGUCg -3' miRNA: 3'- -UG-GUGAGCGCGUGaGGagugaGCCAG- -5' |
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25029 | 3' | -57.9 | NC_005336.1 | + | 61642 | 0.69 | 0.664789 |
Target: 5'- cACCACgccCGCGCGCgcgCCggaCGCgUCGGUg -3' miRNA: 3'- -UGGUGa--GCGCGUGa--GGa--GUG-AGCCAg -5' |
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25029 | 3' | -57.9 | NC_005336.1 | + | 137092 | 0.69 | 0.624094 |
Target: 5'- -aCugUUaGCGCACUCgCUCACUCGcUCg -3' miRNA: 3'- ugGugAG-CGCGUGAG-GAGUGAGCcAG- -5' |
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25029 | 3' | -57.9 | NC_005336.1 | + | 14085 | 0.69 | 0.613915 |
Target: 5'- gGCgACUCGCGCGCUCaugaggCACgugCGG-Ca -3' miRNA: 3'- -UGgUGAGCGCGUGAGga----GUGa--GCCaG- -5' |
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25029 | 3' | -57.9 | NC_005336.1 | + | 137652 | 1.08 | 0.001823 |
Target: 5'- aACCACUCGCGCACUCCUCACUCGGUCu -3' miRNA: 3'- -UGGUGAGCGCGUGAGGAGUGAGCCAG- -5' |
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25029 | 3' | -57.9 | NC_005336.1 | + | 103449 | 0.66 | 0.821133 |
Target: 5'- gGCCGCgggCGUGCACgucugcgacguguucUUCUCGC-CGGUg -3' miRNA: 3'- -UGGUGa--GCGCGUG---------------AGGAGUGaGCCAg -5' |
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25029 | 3' | -57.9 | NC_005336.1 | + | 69139 | 0.66 | 0.818568 |
Target: 5'- cGCCGCggcCGCGaACUCCUCGCgcgagaaggcguaccCGGUg -3' miRNA: 3'- -UGGUGa--GCGCgUGAGGAGUGa--------------GCCAg -5' |
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25029 | 3' | -57.9 | NC_005336.1 | + | 29010 | 0.66 | 0.800205 |
Target: 5'- cCUGCUCGCGCAgUUCUCGCacaugaagacgCGGcUCg -3' miRNA: 3'- uGGUGAGCGCGUgAGGAGUGa----------GCC-AG- -5' |
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25029 | 3' | -57.9 | NC_005336.1 | + | 130164 | 0.66 | 0.791223 |
Target: 5'- -gCGCUCGCGCACcaggCCgCGCUCGcG-Cg -3' miRNA: 3'- ugGUGAGCGCGUGa---GGaGUGAGC-CaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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