miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25029 3' -57.9 NC_005336.1 + 6060 0.68 0.715001
Target:  5'- gACCACggUCGCGUAgUCCgccagCGCUCGcUCc -3'
miRNA:   3'- -UGGUG--AGCGCGUgAGGa----GUGAGCcAG- -5'
25029 3' -57.9 NC_005336.1 + 8906 0.69 0.664789
Target:  5'- cGCgCGCUCGCGCAC-CCagaagCGGUCg -3'
miRNA:   3'- -UG-GUGAGCGCGUGaGGagugaGCCAG- -5'
25029 3' -57.9 NC_005336.1 + 9416 0.71 0.517887
Target:  5'- gGCCGCgugcagaGCGCGCUcgggcucgccgagaaCCUCGCUCGG-Cg -3'
miRNA:   3'- -UGGUGag-----CGCGUGA---------------GGAGUGAGCCaG- -5'
25029 3' -57.9 NC_005336.1 + 11588 0.67 0.73173
Target:  5'- cAUCGCUCgGCGCGCagCCUuCGCggauaucaggguguUCGGUCg -3'
miRNA:   3'- -UGGUGAG-CGCGUGa-GGA-GUG--------------AGCCAG- -5'
25029 3' -57.9 NC_005336.1 + 11731 0.71 0.513997
Target:  5'- -gCGCUCGCGCGCUCUccgCACUCagcaaGUCu -3'
miRNA:   3'- ugGUGAGCGCGUGAGGa--GUGAGc----CAG- -5'
25029 3' -57.9 NC_005336.1 + 11789 0.69 0.624094
Target:  5'- cACgCACUCGCGCGuggCCgCGCUCGG-Cg -3'
miRNA:   3'- -UG-GUGAGCGCGUga-GGaGUGAGCCaG- -5'
25029 3' -57.9 NC_005336.1 + 13801 0.72 0.466483
Target:  5'- gGCCACgCGCGCgaaggccgccaGCUCCUCGCgCGG-Ca -3'
miRNA:   3'- -UGGUGaGCGCG-----------UGAGGAGUGaGCCaG- -5'
25029 3' -57.9 NC_005336.1 + 14085 0.69 0.613915
Target:  5'- gGCgACUCGCGCGCUCaugaggCACgugCGG-Ca -3'
miRNA:   3'- -UGgUGAGCGCGUGAGga----GUGa--GCCaG- -5'
25029 3' -57.9 NC_005336.1 + 16062 0.66 0.791223
Target:  5'- aGCaGCUCGCGCACgaugCCcgCACUCGc-- -3'
miRNA:   3'- -UGgUGAGCGCGUGa---GGa-GUGAGCcag -5'
25029 3' -57.9 NC_005336.1 + 20736 0.66 0.791223
Target:  5'- uACCGCagCGCGUcguGCUCCgugcCGCU-GGUCg -3'
miRNA:   3'- -UGGUGa-GCGCG---UGAGGa---GUGAgCCAG- -5'
25029 3' -57.9 NC_005336.1 + 25113 0.66 0.800205
Target:  5'- cGCCACgUCGCgGCGCgUCUCGCU-GGUg -3'
miRNA:   3'- -UGGUG-AGCG-CGUGaGGAGUGAgCCAg -5'
25029 3' -57.9 NC_005336.1 + 29010 0.66 0.800205
Target:  5'- cCUGCUCGCGCAgUUCUCGCacaugaagacgCGGcUCg -3'
miRNA:   3'- uGGUGAGCGCGUgAGGAGUGa----------GCC-AG- -5'
25029 3' -57.9 NC_005336.1 + 29167 0.66 0.826215
Target:  5'- cGCCccuaaaugguGCUCGCGCcCUCCgaGCUCGucGUCg -3'
miRNA:   3'- -UGG----------UGAGCGCGuGAGGagUGAGC--CAG- -5'
25029 3' -57.9 NC_005336.1 + 32350 0.7 0.58349
Target:  5'- cGCCGCgCGCGC-CUCCgucaCGCUCGcGUUc -3'
miRNA:   3'- -UGGUGaGCGCGuGAGGa---GUGAGC-CAG- -5'
25029 3' -57.9 NC_005336.1 + 38149 0.68 0.715001
Target:  5'- cACgCACUCGCG-GC-CCUC-CUCGGUg -3'
miRNA:   3'- -UG-GUGAGCGCgUGaGGAGuGAGCCAg -5'
25029 3' -57.9 NC_005336.1 + 39906 0.72 0.494736
Target:  5'- cACCGCUCgGCGCAgUCCUCcagGCUCGcG-Ca -3'
miRNA:   3'- -UGGUGAG-CGCGUgAGGAG---UGAGC-CaG- -5'
25029 3' -57.9 NC_005336.1 + 41965 0.66 0.800205
Target:  5'- cGCCACgCGCGCGCgUCCgcgaGCUCGcG-Ca -3'
miRNA:   3'- -UGGUGaGCGCGUG-AGGag--UGAGC-CaG- -5'
25029 3' -57.9 NC_005336.1 + 42147 0.66 0.826215
Target:  5'- cGCCGCg-GCGCGCggCCUCGCUgugccaCGGcuUCg -3'
miRNA:   3'- -UGGUGagCGCGUGa-GGAGUGA------GCC--AG- -5'
25029 3' -57.9 NC_005336.1 + 46191 0.67 0.782099
Target:  5'- aGCCGCgccaGCGCcuccacgaGgUCCUCGCgcgUGGUCa -3'
miRNA:   3'- -UGGUGag--CGCG--------UgAGGAGUGa--GCCAG- -5'
25029 3' -57.9 NC_005336.1 + 46866 0.67 0.772842
Target:  5'- aGCuCGCUCGCGCGCggcgCCUUGCcgaacagcaccUUGGUa -3'
miRNA:   3'- -UG-GUGAGCGCGUGa---GGAGUG-----------AGCCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.