miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25029 3' -57.9 NC_005336.1 + 68900 0.67 0.772842
Target:  5'- gACCAUcCGCGCGaUCgcgaGCUCGGUCg -3'
miRNA:   3'- -UGGUGaGCGCGUgAGgag-UGAGCCAG- -5'
25029 3' -57.9 NC_005336.1 + 134096 0.67 0.772842
Target:  5'- gACgCGCUCGCGCuggcCUCCgcggCGCUCGc-- -3'
miRNA:   3'- -UG-GUGAGCGCGu---GAGGa---GUGAGCcag -5'
25029 3' -57.9 NC_005336.1 + 127562 0.67 0.772842
Target:  5'- cCCGCUCGCGCGCgacaUCAUcCGG-Cg -3'
miRNA:   3'- uGGUGAGCGCGUGagg-AGUGaGCCaG- -5'
25029 3' -57.9 NC_005336.1 + 46866 0.67 0.772842
Target:  5'- aGCuCGCUCGCGCGCggcgCCUUGCcgaacagcaccUUGGUa -3'
miRNA:   3'- -UG-GUGAGCGCGUGa---GGAGUG-----------AGCCAg -5'
25029 3' -57.9 NC_005336.1 + 135757 0.67 0.76346
Target:  5'- uCCGCgCGCgGCGCcCCUCGC-CGGUg -3'
miRNA:   3'- uGGUGaGCG-CGUGaGGAGUGaGCCAg -5'
25029 3' -57.9 NC_005336.1 + 95526 0.67 0.76346
Target:  5'- -aCGCaaGCGCACUCCggCGCggcgCGGUg -3'
miRNA:   3'- ugGUGagCGCGUGAGGa-GUGa---GCCAg -5'
25029 3' -57.9 NC_005336.1 + 49791 0.67 0.744359
Target:  5'- cAUCGCgagCGCGCGCUCCgagaagcaGCUCGacgccGUCa -3'
miRNA:   3'- -UGGUGa--GCGCGUGAGGag------UGAGC-----CAG- -5'
25029 3' -57.9 NC_005336.1 + 11588 0.67 0.73173
Target:  5'- cAUCGCUCgGCGCGCagCCUuCGCggauaucaggguguUCGGUCg -3'
miRNA:   3'- -UGGUGAG-CGCGUGa-GGA-GUG--------------AGCCAG- -5'
25029 3' -57.9 NC_005336.1 + 77704 0.68 0.724869
Target:  5'- -gCGCUCGCGCACgugCgUCACgaaggCGG-Cg -3'
miRNA:   3'- ugGUGAGCGCGUGa--GgAGUGa----GCCaG- -5'
25029 3' -57.9 NC_005336.1 + 70605 0.68 0.724869
Target:  5'- cCCGCUCGCGCGCgaacugCCcgUCGCgcgccgCGGg- -3'
miRNA:   3'- uGGUGAGCGCGUGa-----GG--AGUGa-----GCCag -5'
25029 3' -57.9 NC_005336.1 + 89611 0.68 0.724869
Target:  5'- cGCCGCcggcCGCGCACcCCUC-UUCGGg- -3'
miRNA:   3'- -UGGUGa---GCGCGUGaGGAGuGAGCCag -5'
25029 3' -57.9 NC_005336.1 + 72032 0.68 0.715001
Target:  5'- aACCGCUCG-GCACUg--CGCgCGGUCa -3'
miRNA:   3'- -UGGUGAGCgCGUGAggaGUGaGCCAG- -5'
25029 3' -57.9 NC_005336.1 + 138032 0.68 0.715001
Target:  5'- -aCACUCGCuCGC-CaCUCACUCGGa- -3'
miRNA:   3'- ugGUGAGCGcGUGaG-GAGUGAGCCag -5'
25029 3' -57.9 NC_005336.1 + 38149 0.68 0.715001
Target:  5'- cACgCACUCGCG-GC-CCUC-CUCGGUg -3'
miRNA:   3'- -UG-GUGAGCGCgUGaGGAGuGAGCCAg -5'
25029 3' -57.9 NC_005336.1 + 6060 0.68 0.715001
Target:  5'- gACCACggUCGCGUAgUCCgccagCGCUCGcUCc -3'
miRNA:   3'- -UGGUG--AGCGCGUgAGGa----GUGAGCcAG- -5'
25029 3' -57.9 NC_005336.1 + 51119 0.68 0.715001
Target:  5'- gGCUcCUCGCucGCGCUggUCACUCGGUa -3'
miRNA:   3'- -UGGuGAGCG--CGUGAggAGUGAGCCAg -5'
25029 3' -57.9 NC_005336.1 + 138032 0.68 0.715001
Target:  5'- -aCACUCGCuCGC-CaCUCACUCGGa- -3'
miRNA:   3'- ugGUGAGCGcGUGaG-GAGUGAGCCag -5'
25029 3' -57.9 NC_005336.1 + 136243 0.68 0.695064
Target:  5'- gGCgCGCUCGCGCugguggcggcggGCUUCgCGCUCGG-Cg -3'
miRNA:   3'- -UG-GUGAGCGCG------------UGAGGaGUGAGCCaG- -5'
25029 3' -57.9 NC_005336.1 + 136243 0.68 0.695064
Target:  5'- gGCgCGCUCGCGCugguggcggcggGCUUCgCGCUCGG-Cg -3'
miRNA:   3'- -UG-GUGAGCGCG------------UGAGGaGUGAGCCaG- -5'
25029 3' -57.9 NC_005336.1 + 128266 0.68 0.682997
Target:  5'- gGCCGCgcgcguggagcgCGUGCGCcgcaagUCCUCGCU-GGUCg -3'
miRNA:   3'- -UGGUGa-----------GCGCGUG------AGGAGUGAgCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.