Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25029 | 5' | -52.9 | NC_005336.1 | + | 137686 | 1.1 | 0.005414 |
Target: 5'- aGAGAACGAGUGACGAGUCGACGAGCGa -3' miRNA: 3'- -CUCUUGCUCACUGCUCAGCUGCUCGC- -5' |
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25029 | 5' | -52.9 | NC_005336.1 | + | 137686 | 1.1 | 0.005414 |
Target: 5'- aGAGAACGAGUGACGAGUCGACGAGCGa -3' miRNA: 3'- -CUCUUGCUCACUGCUCAGCUGCUCGC- -5' |
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25029 | 5' | -52.9 | NC_005336.1 | + | 23614 | 0.72 | 0.76543 |
Target: 5'- gGAGGGCGGG-GugGGGUCGGaGGGCc -3' miRNA: 3'- -CUCUUGCUCaCugCUCAGCUgCUCGc -5' |
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25029 | 5' | -52.9 | NC_005336.1 | + | 92049 | 0.72 | 0.774966 |
Target: 5'- cGGGGAUGAGguGCGAGUUGGCG-GCGc -3' miRNA: 3'- -CUCUUGCUCacUGCUCAGCUGCuCGC- -5' |
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25029 | 5' | -52.9 | NC_005336.1 | + | 2144 | 0.71 | 0.829103 |
Target: 5'- aAGAcCGAGUGAgGAGUgCG-CGAGUGg -3' miRNA: 3'- cUCUuGCUCACUgCUCA-GCuGCUCGC- -5' |
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25029 | 5' | -52.9 | NC_005336.1 | + | 2144 | 0.71 | 0.829103 |
Target: 5'- aAGAcCGAGUGAgGAGUgCG-CGAGUGg -3' miRNA: 3'- cUCUuGCUCACUgCUCA-GCuGCUCGC- -5' |
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25029 | 5' | -52.9 | NC_005336.1 | + | 33783 | 0.7 | 0.869244 |
Target: 5'- uGAGGAUGAGcacgcgcucGGCGccGUCGACGAGCu -3' miRNA: 3'- -CUCUUGCUCa--------CUGCu-CAGCUGCUCGc -5' |
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25029 | 5' | -52.9 | NC_005336.1 | + | 95960 | 0.7 | 0.869244 |
Target: 5'- aAGAGCGAGUcgcagGGCGGGccUCGcACGAGCc -3' miRNA: 3'- cUCUUGCUCA-----CUGCUC--AGC-UGCUCGc -5' |
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25029 | 5' | -52.9 | NC_005336.1 | + | 130267 | 0.69 | 0.897464 |
Target: 5'- cGAGccGCGGgcuGUGGCaGAGUCGcuGCGAGCGa -3' miRNA: 3'- -CUCu-UGCU---CACUG-CUCAGC--UGCUCGC- -5' |
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25029 | 5' | -52.9 | NC_005336.1 | + | 50652 | 0.69 | 0.916152 |
Target: 5'- cGAGAGCGGGUucucgcgcGCGAgGUCGcacACGGGCGu -3' miRNA: 3'- -CUCUUGCUCAc-------UGCU-CAGC---UGCUCGC- -5' |
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25029 | 5' | -52.9 | NC_005336.1 | + | 10117 | 0.68 | 0.927392 |
Target: 5'- -uGAACGuGUGGCugcgcccagGAGUCGGCGcucgcGGCGg -3' miRNA: 3'- cuCUUGCuCACUG---------CUCAGCUGC-----UCGC- -5' |
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25029 | 5' | -52.9 | NC_005336.1 | + | 126968 | 0.68 | 0.932643 |
Target: 5'- gGAGAGCGAGgaGCGuccGGaCGugGAGCGc -3' miRNA: 3'- -CUCUUGCUCacUGC---UCaGCugCUCGC- -5' |
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25029 | 5' | -52.9 | NC_005336.1 | + | 128112 | 0.68 | 0.932643 |
Target: 5'- aAGGACGcG-GACGAGcugcgcgCGGCGGGCGu -3' miRNA: 3'- cUCUUGCuCaCUGCUCa------GCUGCUCGC- -5' |
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25029 | 5' | -52.9 | NC_005336.1 | + | 85193 | 0.68 | 0.937648 |
Target: 5'- uGAGcGCGGccacguccgccGUGuACGGGUCGcGCGAGCGc -3' miRNA: 3'- -CUCuUGCU-----------CAC-UGCUCAGC-UGCUCGC- -5' |
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25029 | 5' | -52.9 | NC_005336.1 | + | 105360 | 0.68 | 0.942409 |
Target: 5'- cGAGGGCGAGcaGACGuguGUgCGcAUGAGCGa -3' miRNA: 3'- -CUCUUGCUCa-CUGCu--CA-GC-UGCUCGC- -5' |
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25029 | 5' | -52.9 | NC_005336.1 | + | 99287 | 0.68 | 0.946927 |
Target: 5'- ---cGCGAGUgGACG-GUCGACGAcGCc -3' miRNA: 3'- cucuUGCUCA-CUGCuCAGCUGCU-CGc -5' |
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25029 | 5' | -52.9 | NC_005336.1 | + | 60247 | 0.68 | 0.946927 |
Target: 5'- aGGGAGCaGGUG-CGGGUUGAggcuUGGGCGg -3' miRNA: 3'- -CUCUUGcUCACuGCUCAGCU----GCUCGC- -5' |
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25029 | 5' | -52.9 | NC_005336.1 | + | 58143 | 0.68 | 0.946927 |
Target: 5'- -uGAACGAGUGGCugcgcGG-CGACGGcGCGg -3' miRNA: 3'- cuCUUGCUCACUGc----UCaGCUGCU-CGC- -5' |
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25029 | 5' | -52.9 | NC_005336.1 | + | 83772 | 0.67 | 0.962633 |
Target: 5'- uAGAACcGGUGACG---CGGCGGGCGc -3' miRNA: 3'- cUCUUGcUCACUGCucaGCUGCUCGC- -5' |
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25029 | 5' | -52.9 | NC_005336.1 | + | 84609 | 0.67 | 0.967269 |
Target: 5'- gGAGGACGAG-GACGAGgaggaagagucugcCGA-GGGCGc -3' miRNA: 3'- -CUCUUGCUCaCUGCUCa-------------GCUgCUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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