Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25029 | 5' | -52.9 | NC_005336.1 | + | 50652 | 0.69 | 0.916152 |
Target: 5'- cGAGAGCGGGUucucgcgcGCGAgGUCGcacACGGGCGu -3' miRNA: 3'- -CUCUUGCUCAc-------UGCU-CAGC---UGCUCGC- -5' |
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25029 | 5' | -52.9 | NC_005336.1 | + | 130267 | 0.69 | 0.897464 |
Target: 5'- cGAGccGCGGgcuGUGGCaGAGUCGcuGCGAGCGa -3' miRNA: 3'- -CUCu-UGCU---CACUG-CUCAGC--UGCUCGC- -5' |
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25029 | 5' | -52.9 | NC_005336.1 | + | 33783 | 0.7 | 0.869244 |
Target: 5'- uGAGGAUGAGcacgcgcucGGCGccGUCGACGAGCu -3' miRNA: 3'- -CUCUUGCUCa--------CUGCu-CAGCUGCUCGc -5' |
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25029 | 5' | -52.9 | NC_005336.1 | + | 95960 | 0.7 | 0.869244 |
Target: 5'- aAGAGCGAGUcgcagGGCGGGccUCGcACGAGCc -3' miRNA: 3'- cUCUUGCUCA-----CUGCUC--AGC-UGCUCGc -5' |
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25029 | 5' | -52.9 | NC_005336.1 | + | 2144 | 0.71 | 0.829103 |
Target: 5'- aAGAcCGAGUGAgGAGUgCG-CGAGUGg -3' miRNA: 3'- cUCUuGCUCACUgCUCA-GCuGCUCGC- -5' |
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25029 | 5' | -52.9 | NC_005336.1 | + | 2144 | 0.71 | 0.829103 |
Target: 5'- aAGAcCGAGUGAgGAGUgCG-CGAGUGg -3' miRNA: 3'- cUCUuGCUCACUgCUCA-GCuGCUCGC- -5' |
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25029 | 5' | -52.9 | NC_005336.1 | + | 92049 | 0.72 | 0.774966 |
Target: 5'- cGGGGAUGAGguGCGAGUUGGCG-GCGc -3' miRNA: 3'- -CUCUUGCUCacUGCUCAGCUGCuCGC- -5' |
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25029 | 5' | -52.9 | NC_005336.1 | + | 23614 | 0.72 | 0.76543 |
Target: 5'- gGAGGGCGGG-GugGGGUCGGaGGGCc -3' miRNA: 3'- -CUCUUGCUCaCugCUCAGCUgCUCGc -5' |
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25029 | 5' | -52.9 | NC_005336.1 | + | 137686 | 1.1 | 0.005414 |
Target: 5'- aGAGAACGAGUGACGAGUCGACGAGCGa -3' miRNA: 3'- -CUCUUGCUCACUGCUCAGCUGCUCGC- -5' |
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25029 | 5' | -52.9 | NC_005336.1 | + | 137686 | 1.1 | 0.005414 |
Target: 5'- aGAGAACGAGUGACGAGUCGACGAGCGa -3' miRNA: 3'- -CUCUUGCUCACUGCUCAGCUGCUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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