miRNA display CGI


Results 21 - 34 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25030 3' -54.3 NC_005336.1 + 25145 0.73 0.573213
Target:  5'- uGCUCACgCGCUCGCugccgccgccgUCACUCAC-CGc -3'
miRNA:   3'- uUGAGUGaGCGAGCG-----------AGUGAGUGaGC- -5'
25030 3' -54.3 NC_005336.1 + 137090 0.74 0.542342
Target:  5'- cAACUguUagCGCacUCGCUCACUCGCUCGa -3'
miRNA:   3'- -UUGAguGa-GCG--AGCGAGUGAGUGAGC- -5'
25030 3' -54.3 NC_005336.1 + 137090 0.74 0.542342
Target:  5'- cAACUguUagCGCacUCGCUCACUCGCUCGa -3'
miRNA:   3'- -UUGAguGa-GCG--AGCGAGUGAGUGAGC- -5'
25030 3' -54.3 NC_005336.1 + 137719 0.75 0.482462
Target:  5'- cACUCA-UCGCUCGCUCGCUCAg--- -3'
miRNA:   3'- uUGAGUgAGCGAGCGAGUGAGUgagc -5'
25030 3' -54.3 NC_005336.1 + 137719 0.75 0.482462
Target:  5'- cACUCA-UCGCUCGCUCGCUCAg--- -3'
miRNA:   3'- uUGAGUgAGCGAGCGAGUGAGUgagc -5'
25030 3' -54.3 NC_005336.1 + 51118 0.76 0.435105
Target:  5'- cGGCUC-CUCGCUCGCgcuGgUCACUCGg -3'
miRNA:   3'- -UUGAGuGAGCGAGCGag-UgAGUGAGC- -5'
25030 3' -54.3 NC_005336.1 + 137323 0.77 0.39055
Target:  5'- --gUCaACUCGCUCaCUCACUCGCUCa -3'
miRNA:   3'- uugAG-UGAGCGAGcGAGUGAGUGAGc -5'
25030 3' -54.3 NC_005336.1 + 137323 0.77 0.39055
Target:  5'- --gUCaACUCGCUCaCUCACUCGCUCa -3'
miRNA:   3'- uugAG-UGAGCGAGcGAGUGAGUGAGc -5'
25030 3' -54.3 NC_005336.1 + 138188 0.83 0.171169
Target:  5'- gAACUCGCUCGCUCGCUCGgaCGCaggUCGg -3'
miRNA:   3'- -UUGAGUGAGCGAGCGAGUgaGUG---AGC- -5'
25030 3' -54.3 NC_005336.1 + 138188 0.83 0.171169
Target:  5'- gAACUCGCUCGCUCGCUCGgaCGCaggUCGg -3'
miRNA:   3'- -UUGAGUGAGCGAGCGAGUgaGUG---AGC- -5'
25030 3' -54.3 NC_005336.1 + 138032 0.87 0.103436
Target:  5'- ---aCACUCGCUCGC-CACUCACUCGg -3'
miRNA:   3'- uugaGUGAGCGAGCGaGUGAGUGAGC- -5'
25030 3' -54.3 NC_005336.1 + 138032 0.87 0.103436
Target:  5'- ---aCACUCGCUCGC-CACUCACUCGg -3'
miRNA:   3'- uugaGUGAGCGAGCGaGUGAGUGAGC- -5'
25030 3' -54.3 NC_005336.1 + 137134 1.07 0.004463
Target:  5'- uAACUCACUCGCUCGCUCACUCACUCGg -3'
miRNA:   3'- -UUGAGUGAGCGAGCGAGUGAGUGAGC- -5'
25030 3' -54.3 NC_005336.1 + 137134 1.07 0.004463
Target:  5'- uAACUCACUCGCUCGCUCACUCACUCGg -3'
miRNA:   3'- -UUGAGUGAGCGAGCGAGUGAGUGAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.