miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25030 5' -41 NC_005336.1 + 137689 0.67 1
Target:  5'- gAACGAGUg-ACGAGUcgACGAGc--- -3'
miRNA:   3'- -UUGUUCAaaUGCUCAaaUGCUCaauu -5'
25030 5' -41 NC_005336.1 + 32438 0.67 1
Target:  5'- aGACAGGUUUAUGGGUuaUUugGAc---- -3'
miRNA:   3'- -UUGUUCAAAUGCUCA--AAugCUcaauu -5'
25030 5' -41 NC_005336.1 + 2478 0.66 1
Target:  5'- gAGCGAGU----GAGUgaGCGAGUUGAc -3'
miRNA:   3'- -UUGUUCAaaugCUCAaaUGCUCAAUU- -5'
25030 5' -41 NC_005336.1 + 2478 0.66 1
Target:  5'- gAGCGAGU----GAGUgaGCGAGUUGAc -3'
miRNA:   3'- -UUGUUCAaaugCUCAaaUGCUCAAUU- -5'
25030 5' -41 NC_005336.1 + 12025 0.66 1
Target:  5'- uAGCAGGcggGCGAGUUcuuCGAGUUc- -3'
miRNA:   3'- -UUGUUCaaaUGCUCAAau-GCUCAAuu -5'
25030 5' -41 NC_005336.1 + 137689 0.67 1
Target:  5'- gAACGAGUg-ACGAGUcgACGAGc--- -3'
miRNA:   3'- -UUGUUCAaaUGCUCAaaUGCUCaauu -5'
25030 5' -41 NC_005336.1 + 24864 0.69 0.999999
Target:  5'- cGGCAuGUcUGCGAGUUUACGAaGUc-- -3'
miRNA:   3'- -UUGUuCAaAUGCUCAAAUGCU-CAauu -5'
25030 5' -41 NC_005336.1 + 13307 0.7 0.999998
Target:  5'- aGACGAGggcgGCGGGgaugUGCGAGUUu- -3'
miRNA:   3'- -UUGUUCaaa-UGCUCaa--AUGCUCAAuu -5'
25030 5' -41 NC_005336.1 + 885 0.72 0.999892
Target:  5'- --aAAGUUcUGCGAGUUUGCGGGg--- -3'
miRNA:   3'- uugUUCAA-AUGCUCAAAUGCUCaauu -5'
25030 5' -41 NC_005336.1 + 885 0.72 0.999892
Target:  5'- --aAAGUUcUGCGAGUUUGCGGGg--- -3'
miRNA:   3'- uugUUCAA-AUGCUCAAAUGCUCaauu -5'
25030 5' -41 NC_005336.1 + 137475 0.81 0.939839
Target:  5'- uAAUAAGUUaACGAGUUaGCGAGUUAAc -3'
miRNA:   3'- -UUGUUCAAaUGCUCAAaUGCUCAAUU- -5'
25030 5' -41 NC_005336.1 + 137627 0.81 0.939839
Target:  5'- uAAUAAGUUaACGAGUUaGCGAGUUAAc -3'
miRNA:   3'- -UUGUUCAAaUGCUCAAaUGCUCAAUU- -5'
25030 5' -41 NC_005336.1 + 137627 0.81 0.939839
Target:  5'- uAAUAAGUUaACGAGUUaGCGAGUUAAc -3'
miRNA:   3'- -UUGUUCAAaUGCUCAAaUGCUCAAUU- -5'
25030 5' -41 NC_005336.1 + 137475 0.81 0.939839
Target:  5'- uAAUAAGUUaACGAGUUaGCGAGUUAAc -3'
miRNA:   3'- -UUGUUCAAaUGCUCAAaUGCUCAAUU- -5'
25030 5' -41 NC_005336.1 + 137009 0.88 0.718587
Target:  5'- gAAC-AGUUUACGAGUUUACGAGUUu- -3'
miRNA:   3'- -UUGuUCAAAUGCUCAAAUGCUCAAuu -5'
25030 5' -41 NC_005336.1 + 137009 0.88 0.718587
Target:  5'- gAAC-AGUUUACGAGUUUACGAGUUu- -3'
miRNA:   3'- -UUGuUCAAAUGCUCAAAUGCUCAAuu -5'
25030 5' -41 NC_005336.1 + 137169 1.05 0.123837
Target:  5'- gAACAAGUUUACGAGUUUACGAGUUAAc -3'
miRNA:   3'- -UUGUUCAAAUGCUCAAAUGCUCAAUU- -5'
25030 5' -41 NC_005336.1 + 137169 1.05 0.123837
Target:  5'- gAACAAGUUUACGAGUUUACGAGUUAAc -3'
miRNA:   3'- -UUGUUCAAAUGCUCAAAUGCUCAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.