Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25031 | 3' | -45.5 | NC_005336.1 | + | 137960 | 0.76 | 0.909954 |
Target: 5'- -gGACAGUUAACgagucgacagucgaCACUCACUCgCUCg -3' miRNA: 3'- uaUUGUCAAUUGa-------------GUGAGUGAGaGAG- -5' |
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25031 | 3' | -45.5 | NC_005336.1 | + | 137960 | 0.76 | 0.909954 |
Target: 5'- -gGACAGUUAACgagucgacagucgaCACUCACUCgCUCg -3' miRNA: 3'- uaUUGUCAAUUGa-------------GUGAGUGAGaGAG- -5' |
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25031 | 3' | -45.5 | NC_005336.1 | + | 137490 | 0.76 | 0.907271 |
Target: 5'- uUAGCgAGUUAAC-CACUCGCUCaCUCa -3' miRNA: 3'- uAUUG-UCAAUUGaGUGAGUGAGaGAG- -5' |
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25031 | 3' | -45.5 | NC_005336.1 | + | 137090 | 0.76 | 0.907271 |
Target: 5'- -cAACuGUUAgcgcACUCGCUCACUCgCUCg -3' miRNA: 3'- uaUUGuCAAU----UGAGUGAGUGAGaGAG- -5' |
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25031 | 3' | -45.5 | NC_005336.1 | + | 137490 | 0.76 | 0.907271 |
Target: 5'- uUAGCgAGUUAAC-CACUCGCUCaCUCa -3' miRNA: 3'- uAUUG-UCAAUUGaGUGAGUGAGaGAG- -5' |
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25031 | 3' | -45.5 | NC_005336.1 | + | 137090 | 0.76 | 0.907271 |
Target: 5'- -cAACuGUUAgcgcACUCGCUCACUCgCUCg -3' miRNA: 3'- uaUUGuCAAU----UGAGUGAGUGAGaGAG- -5' |
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25031 | 3' | -45.5 | NC_005336.1 | + | 138101 | 0.8 | 0.766745 |
Target: 5'- uUAACaAGUUAaccACUCACUCGCUCgCUCg -3' miRNA: 3'- uAUUG-UCAAU---UGAGUGAGUGAGaGAG- -5' |
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25031 | 3' | -45.5 | NC_005336.1 | + | 138101 | 0.8 | 0.766745 |
Target: 5'- uUAACaAGUUAaccACUCACUCGCUCgCUCg -3' miRNA: 3'- uAUUG-UCAAU---UGAGUGAGUGAGaGAG- -5' |
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25031 | 3' | -45.5 | NC_005336.1 | + | 138181 | 0.81 | 0.679808 |
Target: 5'- -gAACGGcgAACUCGCUCGCUCgCUCg -3' miRNA: 3'- uaUUGUCaaUUGAGUGAGUGAGaGAG- -5' |
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25031 | 3' | -45.5 | NC_005336.1 | + | 138181 | 0.81 | 0.679808 |
Target: 5'- -gAACGGcgAACUCGCUCGCUCgCUCg -3' miRNA: 3'- uaUUGUCaaUUGAGUGAGUGAGaGAG- -5' |
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25031 | 3' | -45.5 | NC_005336.1 | + | 2725 | 0.81 | 0.679808 |
Target: 5'- cUAACAGUUGACUUguGCUCuuUCUCUCa -3' miRNA: 3'- uAUUGUCAAUUGAG--UGAGugAGAGAG- -5' |
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25031 | 3' | -45.5 | NC_005336.1 | + | 2725 | 0.81 | 0.679808 |
Target: 5'- cUAACAGUUGACUUguGCUCuuUCUCUCa -3' miRNA: 3'- uAUUGUCAAUUGAG--UGAGugAGAGAG- -5' |
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25031 | 3' | -45.5 | NC_005336.1 | + | 137123 | 0.82 | 0.634804 |
Target: 5'- -gAACAagucGUUAACUCACUCGCUCgCUCa -3' miRNA: 3'- uaUUGU----CAAUUGAGUGAGUGAGaGAG- -5' |
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25031 | 3' | -45.5 | NC_005336.1 | + | 137123 | 0.82 | 0.634804 |
Target: 5'- -gAACAagucGUUAACUCACUCGCUCgCUCa -3' miRNA: 3'- uaUUGU----CAAUUGAGUGAGUGAGaGAG- -5' |
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25031 | 3' | -45.5 | NC_005336.1 | + | 137252 | 0.83 | 0.600982 |
Target: 5'- -cGACAGUccACUCACUCACUCaCUCg -3' miRNA: 3'- uaUUGUCAauUGAGUGAGUGAGaGAG- -5' |
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25031 | 3' | -45.5 | NC_005336.1 | + | 137252 | 0.83 | 0.600982 |
Target: 5'- -cGACAGUccACUCACUCACUCaCUCg -3' miRNA: 3'- uaUUGUCAauUGAGUGAGUGAGaGAG- -5' |
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25031 | 3' | -45.5 | NC_005336.1 | + | 2881 | 0.84 | 0.56741 |
Target: 5'- uUGACuGUUGACUUguuCUCACUCUCUCa -3' miRNA: 3'- uAUUGuCAAUUGAGu--GAGUGAGAGAG- -5' |
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25031 | 3' | -45.5 | NC_005336.1 | + | 2881 | 0.84 | 0.56741 |
Target: 5'- uUGACuGUUGACUUguuCUCACUCUCUCa -3' miRNA: 3'- uAUUGuCAAUUGAGu--GAGUGAGAGAG- -5' |
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25031 | 3' | -45.5 | NC_005336.1 | + | 137318 | 0.85 | 0.512664 |
Target: 5'- -gAACAGUcAACUCGCUCACUCaCUCg -3' miRNA: 3'- uaUUGUCAaUUGAGUGAGUGAGaGAG- -5' |
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25031 | 3' | -45.5 | NC_005336.1 | + | 137318 | 0.85 | 0.512664 |
Target: 5'- -gAACAGUcAACUCGCUCACUCaCUCg -3' miRNA: 3'- uaUUGUCAaUUGAGUGAGUGAGaGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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