Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25031 | 5' | -47.1 | NC_005336.1 | + | 137684 | 0.71 | 0.968638 |
Target: 5'- gGAGAGAAcGAGUgACGAGUCGACg--- -3' miRNA: 3'- -CUCUCUUuCUCG-UGUUCAGUUGacaa -5' |
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25031 | 5' | -47.1 | NC_005336.1 | + | 137684 | 0.71 | 0.968638 |
Target: 5'- gGAGAGAAcGAGUgACGAGUCGACg--- -3' miRNA: 3'- -CUCUCUUuCUCG-UGUUCAGUUGacaa -5' |
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25031 | 5' | -47.1 | NC_005336.1 | + | 136911 | 0.73 | 0.938994 |
Target: 5'- aGAGuGAGAGAGUgagaACAAGUCAACaGUc -3' miRNA: 3'- -CUCuCUUUCUCG----UGUUCAGUUGaCAa -5' |
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25031 | 5' | -47.1 | NC_005336.1 | + | 136911 | 0.73 | 0.938994 |
Target: 5'- aGAGuGAGAGAGUgagaACAAGUCAACaGUc -3' miRNA: 3'- -CUCuCUUUCUCG----UGUUCAGUUGaCAa -5' |
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25031 | 5' | -47.1 | NC_005336.1 | + | 2757 | 0.74 | 0.909403 |
Target: 5'- cGAGuGAGAGAGUGaguGAGUUAACUGUUa -3' miRNA: 3'- -CUCuCUUUCUCGUg--UUCAGUUGACAA- -5' |
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25031 | 5' | -47.1 | NC_005336.1 | + | 2757 | 0.74 | 0.909403 |
Target: 5'- cGAGuGAGAGAGUGaguGAGUUAACUGUUa -3' miRNA: 3'- -CUCuCUUUCUCGUg--UUCAGUUGACAA- -5' |
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25031 | 5' | -47.1 | NC_005336.1 | + | 137071 | 1.07 | 0.021705 |
Target: 5'- uGAGAGAAAGAGCACAAGUCAACUGUUa -3' miRNA: 3'- -CUCUCUUUCUCGUGUUCAGUUGACAA- -5' |
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25031 | 5' | -47.1 | NC_005336.1 | + | 137071 | 1.07 | 0.021705 |
Target: 5'- uGAGAGAAAGAGCACAAGUCAACUGUUa -3' miRNA: 3'- -CUCUCUUUCUCGUGUUCAGUUGACAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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