Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25032 | 5' | -47.5 | NC_005336.1 | + | 125856 | 0.68 | 0.995064 |
Target: 5'- aGAGAGcGUG-GAGCAGGacCAGCAcGUCg -3' miRNA: 3'- -CUCUCuCACuCUUGUUCa-GUUGU-CAG- -5' |
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25032 | 5' | -47.5 | NC_005336.1 | + | 136864 | 0.86 | 0.34771 |
Target: 5'- aAGcGAGUGcGAACAGGUCAACAGUCg -3' miRNA: 3'- cUCuCUCACuCUUGUUCAGUUGUCAG- -5' |
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25032 | 5' | -47.5 | NC_005336.1 | + | 136864 | 0.86 | 0.34771 |
Target: 5'- aAGcGAGUGcGAACAGGUCAACAGUCg -3' miRNA: 3'- cUCuCUCACuCUUGUUCAGUUGUCAG- -5' |
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25032 | 5' | -47.5 | NC_005336.1 | + | 136915 | 1.12 | 0.011263 |
Target: 5'- uGAGAGAGUGAGAACAAGUCAACAGUCa -3' miRNA: 3'- -CUCUCUCACUCUUGUUCAGUUGUCAG- -5' |
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25032 | 5' | -47.5 | NC_005336.1 | + | 136915 | 1.12 | 0.011263 |
Target: 5'- uGAGAGAGUGAGAACAAGUCAACAGUCa -3' miRNA: 3'- -CUCUCUCACUCUUGUUCAGUUGUCAG- -5' |
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25032 | 5' | -47.5 | NC_005336.1 | + | 137071 | 0.72 | 0.954723 |
Target: 5'- uGAGAGAaaGAGcACAAGUCAACuGUUa -3' miRNA: 3'- -CUCUCUcaCUCuUGUUCAGUUGuCAG- -5' |
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25032 | 5' | -47.5 | NC_005336.1 | + | 137071 | 0.72 | 0.954723 |
Target: 5'- uGAGAGAaaGAGcACAAGUCAACuGUUa -3' miRNA: 3'- -CUCUCUcaCUCuUGUUCAGUUGuCAG- -5' |
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25032 | 5' | -47.5 | NC_005336.1 | + | 137164 | 0.71 | 0.972563 |
Target: 5'- cGAGAGAacaaGUuuacGAGuuuACGAGUUAACGGUCg -3' miRNA: 3'- -CUCUCU----CA----CUCu--UGUUCAGUUGUCAG- -5' |
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25032 | 5' | -47.5 | NC_005336.1 | + | 137164 | 0.71 | 0.972563 |
Target: 5'- cGAGAGAacaaGUuuacGAGuuuACGAGUUAACGGUCg -3' miRNA: 3'- -CUCUCU----CA----CUCu--UGUUCAGUUGUCAG- -5' |
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25032 | 5' | -47.5 | NC_005336.1 | + | 137232 | 0.79 | 0.694243 |
Target: 5'- cGAGAGAacgGAuAGCGAGUCGACAGUCc -3' miRNA: 3'- -CUCUCUca-CUcUUGUUCAGUUGUCAG- -5' |
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25032 | 5' | -47.5 | NC_005336.1 | + | 137232 | 0.79 | 0.694243 |
Target: 5'- cGAGAGAacgGAuAGCGAGUCGACAGUCc -3' miRNA: 3'- -CUCUCUca-CUcUUGUUCAGUUGUCAG- -5' |
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25032 | 5' | -47.5 | NC_005336.1 | + | 137282 | 0.66 | 0.999339 |
Target: 5'- aAGAGAucaaGUuaacaaguuaacaaGAGAACGAGagAACAGUCa -3' miRNA: 3'- cUCUCU----CA--------------CUCUUGUUCagUUGUCAG- -5' |
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25032 | 5' | -47.5 | NC_005336.1 | + | 137282 | 0.66 | 0.999339 |
Target: 5'- aAGAGAucaaGUuaacaaguuaacaaGAGAACGAGagAACAGUCa -3' miRNA: 3'- cUCUCU----CA--------------CUCUUGUUCagUUGUCAG- -5' |
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25032 | 5' | -47.5 | NC_005336.1 | + | 137456 | 0.69 | 0.989656 |
Target: 5'- aAGAGAGUGcAGGACAagauaauaAGUUAACgAGUUa -3' miRNA: 3'- cUCUCUCAC-UCUUGU--------UCAGUUG-UCAG- -5' |
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25032 | 5' | -47.5 | NC_005336.1 | + | 137456 | 0.69 | 0.989656 |
Target: 5'- aAGAGAGUGcAGGACAagauaauaAGUUAACgAGUUa -3' miRNA: 3'- cUCUCUCAC-UCUUGU--------UCAGUUG-UCAG- -5' |
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25032 | 5' | -47.5 | NC_005336.1 | + | 137608 | 0.69 | 0.989656 |
Target: 5'- aAGAGAGUGcAGGACAagauaauaAGUUAACgAGUUa -3' miRNA: 3'- cUCUCUCAC-UCUUGU--------UCAGUUG-UCAG- -5' |
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25032 | 5' | -47.5 | NC_005336.1 | + | 137608 | 0.69 | 0.989656 |
Target: 5'- aAGAGAGUGcAGGACAagauaauaAGUUAACgAGUUa -3' miRNA: 3'- cUCUCUCAC-UCUUGU--------UCAGUUG-UCAG- -5' |
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25032 | 5' | -47.5 | NC_005336.1 | + | 137683 | 0.66 | 0.999506 |
Target: 5'- aGGAGAGaacGAGuGACGAGUCGACGa-- -3' miRNA: 3'- cUCUCUCa--CUC-UUGUUCAGUUGUcag -5' |
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25032 | 5' | -47.5 | NC_005336.1 | + | 137683 | 0.66 | 0.999506 |
Target: 5'- aGGAGAGaacGAGuGACGAGUCGACGa-- -3' miRNA: 3'- cUCUCUCa--CUC-UUGUUCAGUUGUcag -5' |
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25032 | 5' | -47.5 | NC_005336.1 | + | 137744 | 0.71 | 0.975409 |
Target: 5'- aAGAGAGcaGAGGACGAGUUAAUaAGUUa -3' miRNA: 3'- cUCUCUCa-CUCUUGUUCAGUUG-UCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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