miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25032 5' -47.5 NC_005336.1 + 136915 1.12 0.011263
Target:  5'- uGAGAGAGUGAGAACAAGUCAACAGUCa -3'
miRNA:   3'- -CUCUCUCACUCUUGUUCAGUUGUCAG- -5'
25032 5' -47.5 NC_005336.1 + 136915 1.12 0.011263
Target:  5'- uGAGAGAGUGAGAACAAGUCAACAGUCa -3'
miRNA:   3'- -CUCUCUCACUCUUGUUCAGUUGUCAG- -5'
25032 5' -47.5 NC_005336.1 + 137948 0.9 0.208462
Target:  5'- uGAGAGAGUaGAGGACAguuaacgAGUCGACAGUCg -3'
miRNA:   3'- -CUCUCUCA-CUCUUGU-------UCAGUUGUCAG- -5'
25032 5' -47.5 NC_005336.1 + 137948 0.9 0.208462
Target:  5'- uGAGAGAGUaGAGGACAguuaacgAGUCGACAGUCg -3'
miRNA:   3'- -CUCUCUCA-CUCUUGU-------UCAGUUGUCAG- -5'
25032 5' -47.5 NC_005336.1 + 136864 0.86 0.34771
Target:  5'- aAGcGAGUGcGAACAGGUCAACAGUCg -3'
miRNA:   3'- cUCuCUCACuCUUGUUCAGUUGUCAG- -5'
25032 5' -47.5 NC_005336.1 + 136864 0.86 0.34771
Target:  5'- aAGcGAGUGcGAACAGGUCAACAGUCg -3'
miRNA:   3'- cUCuCUCACuCUUGUUCAGUUGUCAG- -5'
25032 5' -47.5 NC_005336.1 + 138136 0.82 0.55169
Target:  5'- aAGAGAGUaGAGAACcAGUUAGCAGUUg -3'
miRNA:   3'- cUCUCUCA-CUCUUGuUCAGUUGUCAG- -5'
25032 5' -47.5 NC_005336.1 + 138136 0.82 0.55169
Target:  5'- aAGAGAGUaGAGAACcAGUUAGCAGUUg -3'
miRNA:   3'- cUCUCUCA-CUCUUGuUCAGUUGUCAG- -5'
25032 5' -47.5 NC_005336.1 + 138057 0.81 0.595281
Target:  5'- uGAGAGAGUaGAGGACGAGUUAAUaAGUUa -3'
miRNA:   3'- -CUCUCUCA-CUCUUGUUCAGUUG-UCAG- -5'
25032 5' -47.5 NC_005336.1 + 138057 0.81 0.595281
Target:  5'- uGAGAGAGUaGAGGACGAGUUAAUaAGUUa -3'
miRNA:   3'- -CUCUCUCA-CUCUUGUUCAGUUG-UCAG- -5'
25032 5' -47.5 NC_005336.1 + 137232 0.79 0.694243
Target:  5'- cGAGAGAacgGAuAGCGAGUCGACAGUCc -3'
miRNA:   3'- -CUCUCUca-CUcUUGUUCAGUUGUCAG- -5'
25032 5' -47.5 NC_005336.1 + 137232 0.79 0.694243
Target:  5'- cGAGAGAacgGAuAGCGAGUCGACAGUCc -3'
miRNA:   3'- -CUCUCUca-CUcUUGUUCAGUUGUCAG- -5'
25032 5' -47.5 NC_005336.1 + 138002 0.78 0.715847
Target:  5'- uGAGAGAGUaGAGAACAcgauaacgAGUCGACAcUCg -3'
miRNA:   3'- -CUCUCUCA-CUCUUGU--------UCAGUUGUcAG- -5'
25032 5' -47.5 NC_005336.1 + 138002 0.78 0.715847
Target:  5'- uGAGAGAGUaGAGAACAcgauaacgAGUCGACAcUCg -3'
miRNA:   3'- -CUCUCUCA-CUCUUGU--------UCAGUUGUcAG- -5'
25032 5' -47.5 NC_005336.1 + 2761 0.74 0.899013
Target:  5'- uGAGAGAGUGAGu--GAGUUAACuGUUa -3'
miRNA:   3'- -CUCUCUCACUCuugUUCAGUUGuCAG- -5'
25032 5' -47.5 NC_005336.1 + 2761 0.74 0.899013
Target:  5'- uGAGAGAGUGAGu--GAGUUAACuGUUa -3'
miRNA:   3'- -CUCUCUCACUCuugUUCAGUUGuCAG- -5'
25032 5' -47.5 NC_005336.1 + 1887 0.72 0.950386
Target:  5'- uGAGAGGGUGucAACuuGUCAACGcGUCa -3'
miRNA:   3'- -CUCUCUCACucUUGuuCAGUUGU-CAG- -5'
25032 5' -47.5 NC_005336.1 + 1887 0.72 0.950386
Target:  5'- uGAGAGGGUGucAACuuGUCAACGcGUCa -3'
miRNA:   3'- -CUCUCUCACucUUGuuCAGUUGU-CAG- -5'
25032 5' -47.5 NC_005336.1 + 137071 0.72 0.954723
Target:  5'- uGAGAGAaaGAGcACAAGUCAACuGUUa -3'
miRNA:   3'- -CUCUCUcaCUCuUGUUCAGUUGuCAG- -5'
25032 5' -47.5 NC_005336.1 + 137071 0.72 0.954723
Target:  5'- uGAGAGAaaGAGcACAAGUCAACuGUUa -3'
miRNA:   3'- -CUCUCUcaCUCuUGUUCAGUUGuCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.