miRNA display CGI


Results 21 - 40 of 498 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25033 3' -55.7 NC_005336.1 + 44066 0.66 0.897464
Target:  5'- gUCAUGGCCAgccGCugCGCgGUggagccugacGCGCCCg -3'
miRNA:   3'- uGGUGUCGGU---UGugGUGgUA----------CGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 123140 0.66 0.897464
Target:  5'- cGCCGCuGCCcuGCgccuuccuGCCGCCGgagggcgGCGCCUc -3'
miRNA:   3'- -UGGUGuCGGu-UG--------UGGUGGUa------CGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 38694 0.66 0.897464
Target:  5'- cGCCGCGGUaCGGCGCCAucCCAgaCGCCg -3'
miRNA:   3'- -UGGUGUCG-GUUGUGGU--GGUacGUGGg -5'
25033 3' -55.7 NC_005336.1 + 127585 0.66 0.897464
Target:  5'- gGCgCACGGCgCuGCACUACCAcUGCGagUCCu -3'
miRNA:   3'- -UG-GUGUCG-GuUGUGGUGGU-ACGU--GGG- -5'
25033 3' -55.7 NC_005336.1 + 24081 0.66 0.897464
Target:  5'- cGCCACGGCCucguACggcgggucgAUCGCCA-GCGCgCg -3'
miRNA:   3'- -UGGUGUCGGu---UG---------UGGUGGUaCGUGgG- -5'
25033 3' -55.7 NC_005336.1 + 114740 0.66 0.897464
Target:  5'- cGCCGgAGCCAcugACCACCccgaaGCCCg -3'
miRNA:   3'- -UGGUgUCGGUug-UGGUGGuacg-UGGG- -5'
25033 3' -55.7 NC_005336.1 + 52813 0.66 0.897464
Target:  5'- -gCGCAGCCAgGCGCaCACCGa-CACCUu -3'
miRNA:   3'- ugGUGUCGGU-UGUG-GUGGUacGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 21437 0.66 0.897464
Target:  5'- cGCCAUccaGGCCuaccGCGCUACC-UGCGCg- -3'
miRNA:   3'- -UGGUG---UCGGu---UGUGGUGGuACGUGgg -5'
25033 3' -55.7 NC_005336.1 + 42232 0.66 0.896803
Target:  5'- cACCGCGGCCGccguggaGCGCgCGCagccGCuGCCCg -3'
miRNA:   3'- -UGGUGUCGGU-------UGUG-GUGgua-CG-UGGG- -5'
25033 3' -55.7 NC_005336.1 + 34897 0.66 0.896803
Target:  5'- cGCCGCGGCggCGGCccucguugGCCuGCCGgauagcuuggucuUGCGCCCg -3'
miRNA:   3'- -UGGUGUCG--GUUG--------UGG-UGGU-------------ACGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 62424 0.66 0.895476
Target:  5'- cGCCGCccgcgcggcgcucGGCCcGCACCugCAcuucccgcggcgGCGCCUg -3'
miRNA:   3'- -UGGUG-------------UCGGuUGUGGugGUa-----------CGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 87686 0.66 0.893467
Target:  5'- uCCGCAGCCugcGCGCCgucgaagccucgcucGCgCAUGaGCCCc -3'
miRNA:   3'- uGGUGUCGGu--UGUGG---------------UG-GUACgUGGG- -5'
25033 3' -55.7 NC_005336.1 + 8746 0.66 0.890755
Target:  5'- gGCCACGGCCGAaGCgGCCAaacagucuCGCCa -3'
miRNA:   3'- -UGGUGUCGGUUgUGgUGGUac------GUGGg -5'
25033 3' -55.7 NC_005336.1 + 117649 0.66 0.890755
Target:  5'- cGCCGCGGCCGGCAuaaacgUCAgCGUGU-CCg -3'
miRNA:   3'- -UGGUGUCGGUUGU------GGUgGUACGuGGg -5'
25033 3' -55.7 NC_005336.1 + 4206 0.66 0.890755
Target:  5'- uUCACuccGCCAuuaAUACCGCCGUuuacGCugCCu -3'
miRNA:   3'- uGGUGu--CGGU---UGUGGUGGUA----CGugGG- -5'
25033 3' -55.7 NC_005336.1 + 35656 0.66 0.890755
Target:  5'- gACgAUGaCCAGCACCGCgucuagcuUGCGCCCg -3'
miRNA:   3'- -UGgUGUcGGUUGUGGUGgu------ACGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 121277 0.66 0.890755
Target:  5'- cGCCGCGGUCGcaagaACUACgAcucGCACCCg -3'
miRNA:   3'- -UGGUGUCGGUug---UGGUGgUa--CGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 58401 0.66 0.890755
Target:  5'- cGCUGCGGUUGACGCCGgCCAcgcagUGCACg- -3'
miRNA:   3'- -UGGUGUCGGUUGUGGU-GGU-----ACGUGgg -5'
25033 3' -55.7 NC_005336.1 + 110416 0.66 0.890755
Target:  5'- aGCCGCugauGCgCAGCGCgGCgCGcGUGCCCa -3'
miRNA:   3'- -UGGUGu---CG-GUUGUGgUG-GUaCGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 89317 0.66 0.890755
Target:  5'- uGCCGCGcgucGCCAuagACGUCGgCGUGCGCUCg -3'
miRNA:   3'- -UGGUGU----CGGU---UGUGGUgGUACGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.