miRNA display CGI


Results 21 - 40 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25033 5' -62.4 NC_005336.1 + 104683 0.66 0.599873
Target:  5'- cGCGGcGCUGCUa--CGCGCUCuCGCa- -3'
miRNA:   3'- -CGUC-CGACGAgccGCGCGAGcGCGac -5'
25033 5' -62.4 NC_005336.1 + 97453 0.66 0.599873
Target:  5'- aGCcGGCaGUUUGaCGUGCUCGUGCUc -3'
miRNA:   3'- -CGuCCGaCGAGCcGCGCGAGCGCGAc -5'
25033 5' -62.4 NC_005336.1 + 90869 0.66 0.589982
Target:  5'- aCGGGCUuCUUGGCGaGCUCGaGCUu -3'
miRNA:   3'- cGUCCGAcGAGCCGCgCGAGCgCGAc -5'
25033 5' -62.4 NC_005336.1 + 41514 0.66 0.589982
Target:  5'- cGCAGGcCUGUUgCGGCG-GCUCuuGCa- -3'
miRNA:   3'- -CGUCC-GACGA-GCCGCgCGAGcgCGac -5'
25033 5' -62.4 NC_005336.1 + 83922 0.66 0.589982
Target:  5'- gGCGGGCacGC-CGGUGCGgggCGCGCc- -3'
miRNA:   3'- -CGUCCGa-CGaGCCGCGCga-GCGCGac -5'
25033 5' -62.4 NC_005336.1 + 50705 0.66 0.589982
Target:  5'- cGCAGGg-GCgCGaGUGCGCUuccCGCGCUc -3'
miRNA:   3'- -CGUCCgaCGaGC-CGCGCGA---GCGCGAc -5'
25033 5' -62.4 NC_005336.1 + 134458 0.66 0.589982
Target:  5'- cGCAGugacGgUGCUCGGCGUGguggcaauUUCGCuGCUGc -3'
miRNA:   3'- -CGUC----CgACGAGCCGCGC--------GAGCG-CGAC- -5'
25033 5' -62.4 NC_005336.1 + 86260 0.66 0.589982
Target:  5'- uGCAGcaGC-GC-CGGCGCGCgCGCGgaGu -3'
miRNA:   3'- -CGUC--CGaCGaGCCGCGCGaGCGCgaC- -5'
25033 5' -62.4 NC_005336.1 + 129961 0.66 0.589982
Target:  5'- --cGGCUGCUCGcCGCGa--GCGCg- -3'
miRNA:   3'- cguCCGACGAGCcGCGCgagCGCGac -5'
25033 5' -62.4 NC_005336.1 + 124171 0.66 0.589982
Target:  5'- gGCAcGCU-CUCGGCGCGCgugcggUCGCGaCa- -3'
miRNA:   3'- -CGUcCGAcGAGCCGCGCG------AGCGC-Gac -5'
25033 5' -62.4 NC_005336.1 + 72919 0.66 0.589982
Target:  5'- -gAGGCgguuguagcGCUCcauGGCGCGCucuaUCGCGCg- -3'
miRNA:   3'- cgUCCGa--------CGAG---CCGCGCG----AGCGCGac -5'
25033 5' -62.4 NC_005336.1 + 9303 0.66 0.589982
Target:  5'- aGCAGGCUcCgCGGCGgGCgCGCGg-- -3'
miRNA:   3'- -CGUCCGAcGaGCCGCgCGaGCGCgac -5'
25033 5' -62.4 NC_005336.1 + 83181 0.66 0.580119
Target:  5'- cGCGGcGCUGCcggacUGGCGCGagccagggCGCGCg- -3'
miRNA:   3'- -CGUC-CGACGa----GCCGCGCga------GCGCGac -5'
25033 5' -62.4 NC_005336.1 + 71044 0.66 0.580119
Target:  5'- uCGGGCUcgggGCUCGuCGCG-UCGCGCa- -3'
miRNA:   3'- cGUCCGA----CGAGCcGCGCgAGCGCGac -5'
25033 5' -62.4 NC_005336.1 + 120930 0.66 0.580119
Target:  5'- -aGGGCggGUUCGGCGacguGCUCGgcaaGCUGc -3'
miRNA:   3'- cgUCCGa-CGAGCCGCg---CGAGCg---CGAC- -5'
25033 5' -62.4 NC_005336.1 + 130258 0.66 0.580119
Target:  5'- cGCGcGGCUGCgccgccugccCGGUGCaCUucucCGCGCUGa -3'
miRNA:   3'- -CGU-CCGACGa---------GCCGCGcGA----GCGCGAC- -5'
25033 5' -62.4 NC_005336.1 + 105910 0.66 0.580119
Target:  5'- uGCAGGaguucgcGCUCGGCGCcuaccGCgacggCGUGCUc -3'
miRNA:   3'- -CGUCCga-----CGAGCCGCG-----CGa----GCGCGAc -5'
25033 5' -62.4 NC_005336.1 + 16641 0.66 0.580119
Target:  5'- cGCAGGUacacgUGCagCGGCGUGCacagguaCGCGCc- -3'
miRNA:   3'- -CGUCCG-----ACGa-GCCGCGCGa------GCGCGac -5'
25033 5' -62.4 NC_005336.1 + 131333 0.66 0.580119
Target:  5'- cGCGcGCUGCuUCGGCGCgGCgccaGCGUg- -3'
miRNA:   3'- -CGUcCGACG-AGCCGCG-CGag--CGCGac -5'
25033 5' -62.4 NC_005336.1 + 77479 0.66 0.580119
Target:  5'- cGCGGGCgGCUaCuGCaGCagcagcuugaGCUUGCGCUGg -3'
miRNA:   3'- -CGUCCGaCGA-GcCG-CG----------CGAGCGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.