miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25034 3' -54.5 NC_005336.1 + 50520 0.66 0.956071
Target:  5'- gGCGGAAGgCCUgUCGGGacg--CGCCg -3'
miRNA:   3'- gUGCCUUUgGGA-AGCCCaacagGCGG- -5'
25034 3' -54.5 NC_005336.1 + 18586 0.66 0.956071
Target:  5'- aGCGGu-GCCUgUCGGaGgagUGUCUGCUc -3'
miRNA:   3'- gUGCCuuUGGGaAGCC-Ca--ACAGGCGG- -5'
25034 3' -54.5 NC_005336.1 + 34348 0.66 0.956071
Target:  5'- gGCGaGAAGCCCUgguggUGGGgccagCaCGCCg -3'
miRNA:   3'- gUGC-CUUUGGGAa----GCCCaaca-G-GCGG- -5'
25034 3' -54.5 NC_005336.1 + 97576 0.66 0.952121
Target:  5'- cCACGGcgGCCgCggugcgCGGGUa--CCGCCg -3'
miRNA:   3'- -GUGCCuuUGG-Gaa----GCCCAacaGGCGG- -5'
25034 3' -54.5 NC_005336.1 + 25079 0.66 0.952121
Target:  5'- -cCGGc-GCCUgaCGGGgagGUCCGCUg -3'
miRNA:   3'- guGCCuuUGGGaaGCCCaa-CAGGCGG- -5'
25034 3' -54.5 NC_005336.1 + 27254 0.66 0.952121
Target:  5'- aCGCGGuagcACCCgUCuGGGUcgaUGUCaugCGCCa -3'
miRNA:   3'- -GUGCCuu--UGGGaAG-CCCA---ACAG---GCGG- -5'
25034 3' -54.5 NC_005336.1 + 6053 0.66 0.952121
Target:  5'- aCGCGcGGACCacggUCGcGUaGUCCGCCa -3'
miRNA:   3'- -GUGCcUUUGGga--AGCcCAaCAGGCGG- -5'
25034 3' -54.5 NC_005336.1 + 39833 0.66 0.947939
Target:  5'- gCGCGGAGugcaagguGCUCUUCGGGcccUUCGCg -3'
miRNA:   3'- -GUGCCUU--------UGGGAAGCCCaacAGGCGg -5'
25034 3' -54.5 NC_005336.1 + 60707 0.66 0.947939
Target:  5'- cCGCGGAGauagucgagguGCCCccgUCGGGcgucgUGUCCauCCa -3'
miRNA:   3'- -GUGCCUU-----------UGGGa--AGCCCa----ACAGGc-GG- -5'
25034 3' -54.5 NC_005336.1 + 135815 0.66 0.943522
Target:  5'- gGCGGcGGGCCCggacgcggCGGGgcGgCUGCCg -3'
miRNA:   3'- gUGCC-UUUGGGaa------GCCCaaCaGGCGG- -5'
25034 3' -54.5 NC_005336.1 + 110662 0.66 0.943522
Target:  5'- uCACGGGAgaGCCCUcgagCGcGGccaccgCCGCCa -3'
miRNA:   3'- -GUGCCUU--UGGGAa---GC-CCaaca--GGCGG- -5'
25034 3' -54.5 NC_005336.1 + 30706 0.66 0.938868
Target:  5'- gGCGGuggcGGCCUcggagUUCGGGU--UCCGCUc -3'
miRNA:   3'- gUGCCu---UUGGG-----AAGCCCAacAGGCGG- -5'
25034 3' -54.5 NC_005336.1 + 88791 0.66 0.938389
Target:  5'- aGCGGcguGGACCCgcugcggaagaugaCGGGUUGgugaugcgccggCCGCCg -3'
miRNA:   3'- gUGCC---UUUGGGaa------------GCCCAACa-----------GGCGG- -5'
25034 3' -54.5 NC_005336.1 + 101344 0.66 0.933975
Target:  5'- uCGCGGAcaAGCUCUUCGGGaccuaCGCg -3'
miRNA:   3'- -GUGCCU--UUGGGAAGCCCaacagGCGg -5'
25034 3' -54.5 NC_005336.1 + 68415 0.66 0.933975
Target:  5'- -uCGGGGACCgCgUCGGGcgUGggCGCCa -3'
miRNA:   3'- guGCCUUUGG-GaAGCCCa-ACagGCGG- -5'
25034 3' -54.5 NC_005336.1 + 25438 0.67 0.930406
Target:  5'- gCGCGGccggcgaAGGCCUcgucgcgcagcagCGGGUUGUCCGgCg -3'
miRNA:   3'- -GUGCC-------UUUGGGaa-----------GCCCAACAGGCgG- -5'
25034 3' -54.5 NC_005336.1 + 126718 0.67 0.92884
Target:  5'- aCGCGGcgccGCCUgcaccgcgcucUCGGGUUGgggCCGUCg -3'
miRNA:   3'- -GUGCCuu--UGGGa----------AGCCCAACa--GGCGG- -5'
25034 3' -54.5 NC_005336.1 + 71647 0.67 0.923465
Target:  5'- cCACGGAGGCCCaggcgUUCGcGGcg--CCGCg -3'
miRNA:   3'- -GUGCCUUUGGG-----AAGC-CCaacaGGCGg -5'
25034 3' -54.5 NC_005336.1 + 78478 0.67 0.917849
Target:  5'- gCGCGGuacguACaugagCGGGUUGUgCGCCu -3'
miRNA:   3'- -GUGCCuu---UGggaa-GCCCAACAgGCGG- -5'
25034 3' -54.5 NC_005336.1 + 100543 0.68 0.899565
Target:  5'- -gUGGAAACCagcaccgCGGGccgGUCCGCg -3'
miRNA:   3'- guGCCUUUGGgaa----GCCCaa-CAGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.