miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25034 5' -51.1 NC_005336.1 + 134207 1.14 0.00411
Target:  5'- gCUACCAUACCAACCAGAGGAUCUCCCg -3'
miRNA:   3'- -GAUGGUAUGGUUGGUCUCCUAGAGGG- -5'
25034 5' -51.1 NC_005336.1 + 138800 0.73 0.781689
Target:  5'- -gGCCG-ACC-GCCAGAGGAcCUCUCg -3'
miRNA:   3'- gaUGGUaUGGuUGGUCUCCUaGAGGG- -5'
25034 5' -51.1 NC_005336.1 + 138800 0.73 0.781689
Target:  5'- -gGCCG-ACC-GCCAGAGGAcCUCUCg -3'
miRNA:   3'- gaUGGUaUGGuUGGUCUCCUaGAGGG- -5'
25034 5' -51.1 NC_005336.1 + 98637 0.72 0.852916
Target:  5'- gCUGCCGcGCacGCCGGAGGucauUUUCCCg -3'
miRNA:   3'- -GAUGGUaUGguUGGUCUCCu---AGAGGG- -5'
25034 5' -51.1 NC_005336.1 + 117828 0.71 0.904203
Target:  5'- gCUGCCGUACCuGCUGGAGGuUCUg-- -3'
miRNA:   3'- -GAUGGUAUGGuUGGUCUCCuAGAggg -5'
25034 5' -51.1 NC_005336.1 + 83060 0.7 0.928089
Target:  5'- gUGCCGgaucuUCGACCAGAGcgcgcuGAUCUCCa -3'
miRNA:   3'- gAUGGUau---GGUUGGUCUC------CUAGAGGg -5'
25034 5' -51.1 NC_005336.1 + 45627 0.7 0.93342
Target:  5'- -cACCGgcGCCGACCGcGGaAUCUCCCg -3'
miRNA:   3'- gaUGGUa-UGGUUGGUcUCcUAGAGGG- -5'
25034 5' -51.1 NC_005336.1 + 132591 0.69 0.943313
Target:  5'- gCUACCuggaguCCGGgCAGGuGGAUCUCgCCa -3'
miRNA:   3'- -GAUGGuau---GGUUgGUCU-CCUAGAG-GG- -5'
25034 5' -51.1 NC_005336.1 + 25917 0.69 0.947879
Target:  5'- -gACCAcGCCGACCAGc--GUCUCCg -3'
miRNA:   3'- gaUGGUaUGGUUGGUCuccUAGAGGg -5'
25034 5' -51.1 NC_005336.1 + 122656 0.68 0.967039
Target:  5'- -cACCGUGcCCGGCCAGcGGucgAUCUgCCu -3'
miRNA:   3'- gaUGGUAU-GGUUGGUCuCC---UAGAgGG- -5'
25034 5' -51.1 NC_005336.1 + 79697 0.68 0.973084
Target:  5'- ---aCAgcuCCucGCCGGAGG-UCUCCCa -3'
miRNA:   3'- gaugGUau-GGu-UGGUCUCCuAGAGGG- -5'
25034 5' -51.1 NC_005336.1 + 86559 0.68 0.973084
Target:  5'- uUACCGcgGCCuuuAGgCAGAGGAUCUUggCCa -3'
miRNA:   3'- gAUGGUa-UGG---UUgGUCUCCUAGAG--GG- -5'
25034 5' -51.1 NC_005336.1 + 107321 0.68 0.973084
Target:  5'- uUACCAguuuccCCAACUuugGGAGGAaCUUCCu -3'
miRNA:   3'- gAUGGUau----GGUUGG---UCUCCUaGAGGG- -5'
25034 5' -51.1 NC_005336.1 + 21872 0.67 0.975786
Target:  5'- aCU-CCAUGCUggUguGAGGGUagucgaUCCCc -3'
miRNA:   3'- -GAuGGUAUGGuuGguCUCCUAg-----AGGG- -5'
25034 5' -51.1 NC_005336.1 + 9091 0.67 0.980586
Target:  5'- gCUACUcgGCCAGuCCGGAGG----CCCg -3'
miRNA:   3'- -GAUGGuaUGGUU-GGUCUCCuagaGGG- -5'
25034 5' -51.1 NC_005336.1 + 131110 0.67 0.980586
Target:  5'- -gGCCAUGCUGACCuGGGGcgUgcgCCa -3'
miRNA:   3'- gaUGGUAUGGUUGGuCUCCuaGa--GGg -5'
25034 5' -51.1 NC_005336.1 + 74063 0.67 0.980586
Target:  5'- -gGCCGUcgagguCUAGCgCGG-GGAUCUCCUg -3'
miRNA:   3'- gaUGGUAu-----GGUUG-GUCuCCUAGAGGG- -5'
25034 5' -51.1 NC_005336.1 + 14335 0.67 0.9827
Target:  5'- --cCCAUcGCagcgaGGCCAGGcGGAUCUCCg -3'
miRNA:   3'- gauGGUA-UGg----UUGGUCU-CCUAGAGGg -5'
25034 5' -51.1 NC_005336.1 + 26950 0.67 0.9827
Target:  5'- -cGCCGgguCCAGgCAGAccgGGAUCUCgCg -3'
miRNA:   3'- gaUGGUau-GGUUgGUCU---CCUAGAGgG- -5'
25034 5' -51.1 NC_005336.1 + 89622 0.67 0.984263
Target:  5'- -cGCCAU-CCGACCGGAGGuugagguugcgCUUCa -3'
miRNA:   3'- gaUGGUAuGGUUGGUCUCCua---------GAGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.