miRNA display CGI


Results 21 - 40 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25035 3' -57.7 NC_005336.1 + 131958 0.66 0.834808
Target:  5'- gGCGCGC-GCcggCGCAUCC--GCGCUaccGGa -3'
miRNA:   3'- -CGCGCGaCGa--GUGUAGGcuCGCGA---CC- -5'
25035 3' -57.7 NC_005336.1 + 58472 0.66 0.834808
Target:  5'- cGCGCGCaUGCugcugcucUCGCAgCCaGGGCGCg-- -3'
miRNA:   3'- -CGCGCG-ACG--------AGUGUaGG-CUCGCGacc -5'
25035 3' -57.7 NC_005336.1 + 117568 0.66 0.834808
Target:  5'- -aGCGCU-CUCGCAgCCGcgcgucuGCGCUGa -3'
miRNA:   3'- cgCGCGAcGAGUGUaGGCu------CGCGACc -5'
25035 3' -57.7 NC_005336.1 + 21126 0.66 0.834808
Target:  5'- uGCGCGCcgGCgugCACGg-CGGGCuGCUGu -3'
miRNA:   3'- -CGCGCGa-CGa--GUGUagGCUCG-CGACc -5'
25035 3' -57.7 NC_005336.1 + 62594 0.66 0.834808
Target:  5'- aCGUGC-GCUCGCuggacCCGcGGCuGCUGGg -3'
miRNA:   3'- cGCGCGaCGAGUGua---GGC-UCG-CGACC- -5'
25035 3' -57.7 NC_005336.1 + 104500 0.66 0.834808
Target:  5'- nGCGCG-UGCUCAC-----AGUGCUGGa -3'
miRNA:   3'- -CGCGCgACGAGUGuaggcUCGCGACC- -5'
25035 3' -57.7 NC_005336.1 + 134097 0.66 0.834808
Target:  5'- aCGCGCUcgcGCUgGCcUCCGcGGCGCUc- -3'
miRNA:   3'- cGCGCGA---CGAgUGuAGGC-UCGCGAcc -5'
25035 3' -57.7 NC_005336.1 + 60841 0.66 0.833987
Target:  5'- cGCGCGCgucgggGCUCucggcggGCGUCucugCGGGCGCg-- -3'
miRNA:   3'- -CGCGCGa-----CGAG-------UGUAG----GCUCGCGacc -5'
25035 3' -57.7 NC_005336.1 + 90112 0.66 0.826518
Target:  5'- uCGuUGCUGCUCACGcucgagucgUCCGAGCuGCc-- -3'
miRNA:   3'- cGC-GCGACGAGUGU---------AGGCUCG-CGacc -5'
25035 3' -57.7 NC_005336.1 + 47307 0.66 0.826518
Target:  5'- cGCucuCGCUcucaucGCUCucucCGUCCGAGUGCUGc -3'
miRNA:   3'- -CGc--GCGA------CGAGu---GUAGGCUCGCGACc -5'
25035 3' -57.7 NC_005336.1 + 115648 0.66 0.826518
Target:  5'- aGCGCGgUGaUCugGUCCccgggacaGAGCGC-GGa -3'
miRNA:   3'- -CGCGCgACgAGugUAGG--------CUCGCGaCC- -5'
25035 3' -57.7 NC_005336.1 + 132960 0.66 0.826518
Target:  5'- cGCGCgGCUGCUgCugGaCgCGGGCGCg-- -3'
miRNA:   3'- -CGCG-CGACGA-GugUaG-GCUCGCGacc -5'
25035 3' -57.7 NC_005336.1 + 116480 0.66 0.826518
Target:  5'- gGCGUGgUGUaCACGgcgCCGAGCagGCUGu -3'
miRNA:   3'- -CGCGCgACGaGUGUa--GGCUCG--CGACc -5'
25035 3' -57.7 NC_005336.1 + 100747 0.66 0.826518
Target:  5'- gGCGUGCUGCgcgacCGCAUCCucgcggccacGCGCUucgaGGa -3'
miRNA:   3'- -CGCGCGACGa----GUGUAGGcu--------CGCGA----CC- -5'
25035 3' -57.7 NC_005336.1 + 95993 0.66 0.826518
Target:  5'- cGCGCGCgGCUCGCcagcUCUG-GCGagaGGa -3'
miRNA:   3'- -CGCGCGaCGAGUGu---AGGCuCGCga-CC- -5'
25035 3' -57.7 NC_005336.1 + 123216 0.66 0.826518
Target:  5'- aCGCGCUGCUgGacgCCG-GCGCa-- -3'
miRNA:   3'- cGCGCGACGAgUguaGGCuCGCGacc -5'
25035 3' -57.7 NC_005336.1 + 69056 0.66 0.825679
Target:  5'- aGCGCGCgGUUCucgGCGUucUCGGGCguguccgGCUGGa -3'
miRNA:   3'- -CGCGCGaCGAG---UGUA--GGCUCG-------CGACC- -5'
25035 3' -57.7 NC_005336.1 + 76759 0.66 0.823997
Target:  5'- uGCGCGgUGCgccgcagCGCGUagUCGAuguaggcagcgugcGCGCUGGu -3'
miRNA:   3'- -CGCGCgACGa------GUGUA--GGCU--------------CGCGACC- -5'
25035 3' -57.7 NC_005336.1 + 127990 0.66 0.818054
Target:  5'- cCGCGUgaacGCgcgCACG-CCGAGCGC-GGc -3'
miRNA:   3'- cGCGCGa---CGa--GUGUaGGCUCGCGaCC- -5'
25035 3' -57.7 NC_005336.1 + 90911 0.66 0.818054
Target:  5'- gGCGCGCUGCgagaGC--CCGAuGUGgUGGu -3'
miRNA:   3'- -CGCGCGACGag--UGuaGGCU-CGCgACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.