miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25035 5' -58.6 NC_005336.1 + 93919 0.67 0.707811
Target:  5'- cUCAugcccGCGCUCauggaGGAGGCgggGUGCUGCg -3'
miRNA:   3'- aAGUu----UGCGAG-----CCUCCGg--CGCGACGa -5'
25035 5' -58.6 NC_005336.1 + 136015 0.67 0.667155
Target:  5'- ---cGGCGCUggCGGccgcGGGCCGCGCgGCg -3'
miRNA:   3'- aaguUUGCGA--GCC----UCCGGCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 44128 0.67 0.65587
Target:  5'- --gGAGCGCUCGcGgccgaguGGGCCgacGCGCUGCc -3'
miRNA:   3'- aagUUUGCGAGC-C-------UCCGG---CGCGACGa -5'
25035 5' -58.6 NC_005336.1 + 121830 0.68 0.626036
Target:  5'- --gGAGCacuGCUCGGAGGa-GUGCUGCa -3'
miRNA:   3'- aagUUUG---CGAGCCUCCggCGCGACGa -5'
25035 5' -58.6 NC_005336.1 + 75912 0.68 0.646619
Target:  5'- cUCGAAgGCgaaGGuGGCCGCGaUGCg -3'
miRNA:   3'- aAGUUUgCGag-CCuCCGGCGCgACGa -5'
25035 5' -58.6 NC_005336.1 + 136608 0.68 0.646619
Target:  5'- -gCGGccGCGCUCGGAguGGCUGCgGCaGCUg -3'
miRNA:   3'- aaGUU--UGCGAGCCU--CCGGCG-CGaCGA- -5'
25035 5' -58.6 NC_005336.1 + 89108 0.68 0.605472
Target:  5'- -cCGcGCGCgCGGAGGCCGaGCgGCUc -3'
miRNA:   3'- aaGUuUGCGaGCCUCCGGCgCGaCGA- -5'
25035 5' -58.6 NC_005336.1 + 93405 0.68 0.636329
Target:  5'- --gAAGCGCUC-GAGGUCGUGgaGCa -3'
miRNA:   3'- aagUUUGCGAGcCUCCGGCGCgaCGa -5'
25035 5' -58.6 NC_005336.1 + 133966 0.68 0.626036
Target:  5'- cUUCcuGCGC-CGGcuGGCCGCGCgcgcgGCg -3'
miRNA:   3'- -AAGuuUGCGaGCCu-CCGGCGCGa----CGa -5'
25035 5' -58.6 NC_005336.1 + 136608 0.68 0.646619
Target:  5'- -gCGGccGCGCUCGGAguGGCUGCgGCaGCUg -3'
miRNA:   3'- aaGUU--UGCGAGCCU--CCGGCG-CGaCGA- -5'
25035 5' -58.6 NC_005336.1 + 122916 0.68 0.646619
Target:  5'- cUUC-AACGUgCGGcAGGCCaCGCUGCg -3'
miRNA:   3'- -AAGuUUGCGaGCC-UCCGGcGCGACGa -5'
25035 5' -58.6 NC_005336.1 + 97567 0.68 0.626036
Target:  5'- -gCGcGCGCUccaCGGcGGCCGCGgUGCg -3'
miRNA:   3'- aaGUuUGCGA---GCCuCCGGCGCgACGa -5'
25035 5' -58.6 NC_005336.1 + 99478 0.68 0.640446
Target:  5'- -gCGAGCGCUCcauggaggacaucguGGAgaaucgcgcGGCCGCGCgGCg -3'
miRNA:   3'- aaGUUUGCGAG---------------CCU---------CCGGCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 103393 0.68 0.614719
Target:  5'- -gCGAGCGCcuuucgcgaggagUgGGAGGCCGUGCgcgcGCUc -3'
miRNA:   3'- aaGUUUGCG-------------AgCCUCCGGCGCGa---CGA- -5'
25035 5' -58.6 NC_005336.1 + 74852 0.68 0.626036
Target:  5'- gUUCGcGCGCUgcgCGGcGcGCCuGCGCUGCUg -3'
miRNA:   3'- -AAGUuUGCGA---GCCuC-CGG-CGCGACGA- -5'
25035 5' -58.6 NC_005336.1 + 29122 0.68 0.595216
Target:  5'- cUCuAugGCggCGGuGGCCGCGCUcgaggGCUc -3'
miRNA:   3'- aAGuUugCGa-GCCuCCGGCGCGA-----CGA- -5'
25035 5' -58.6 NC_005336.1 + 69796 0.68 0.605472
Target:  5'- ---cGGCGCUCGGAcaaCGUGCUGCUg -3'
miRNA:   3'- aaguUUGCGAGCCUccgGCGCGACGA- -5'
25035 5' -58.6 NC_005336.1 + 41202 0.69 0.574794
Target:  5'- gUUCAgcAGCGCgacCGu-GGCCGCGUUGCUc -3'
miRNA:   3'- -AAGU--UUGCGa--GCcuCCGGCGCGACGA- -5'
25035 5' -58.6 NC_005336.1 + 43687 0.69 0.584988
Target:  5'- --uGGACGCgccGAGGCCGCGCguUGCg -3'
miRNA:   3'- aagUUUGCGagcCUCCGGCGCG--ACGa -5'
25035 5' -58.6 NC_005336.1 + 135889 0.69 0.554536
Target:  5'- gUCuGGACGCgCGGcuGCCGCuGCUGCUg -3'
miRNA:   3'- aAG-UUUGCGaGCCucCGGCG-CGACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.