Results 41 - 60 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25035 | 5' | -58.6 | NC_005336.1 | + | 99478 | 0.68 | 0.640446 |
Target: 5'- -gCGAGCGCUCcauggaggacaucguGGAgaaucgcgcGGCCGCGCgGCg -3' miRNA: 3'- aaGUUUGCGAG---------------CCU---------CCGGCGCGaCGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 103393 | 0.68 | 0.614719 |
Target: 5'- -gCGAGCGCcuuucgcgaggagUgGGAGGCCGUGCgcgcGCUc -3' miRNA: 3'- aaGUUUGCG-------------AgCCUCCGGCGCGa---CGA- -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 121830 | 0.68 | 0.626036 |
Target: 5'- --gGAGCacuGCUCGGAGGa-GUGCUGCa -3' miRNA: 3'- aagUUUG---CGAGCCUCCggCGCGACGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 74852 | 0.68 | 0.626036 |
Target: 5'- gUUCGcGCGCUgcgCGGcGcGCCuGCGCUGCUg -3' miRNA: 3'- -AAGUuUGCGA---GCCuC-CGG-CGCGACGA- -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 133966 | 0.68 | 0.626036 |
Target: 5'- cUUCcuGCGC-CGGcuGGCCGCGCgcgcgGCg -3' miRNA: 3'- -AAGuuUGCGaGCCu-CCGGCGCGa----CGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 93405 | 0.68 | 0.636329 |
Target: 5'- --gAAGCGCUC-GAGGUCGUGgaGCa -3' miRNA: 3'- aagUUUGCGAGcCUCCGGCGCgaCGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 75912 | 0.68 | 0.646619 |
Target: 5'- cUCGAAgGCgaaGGuGGCCGCGaUGCg -3' miRNA: 3'- aAGUUUgCGag-CCuCCGGCGCgACGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 69796 | 0.68 | 0.605472 |
Target: 5'- ---cGGCGCUCGGAcaaCGUGCUGCUg -3' miRNA: 3'- aaguUUGCGAGCCUccgGCGCGACGA- -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 89108 | 0.68 | 0.605472 |
Target: 5'- -cCGcGCGCgCGGAGGCCGaGCgGCUc -3' miRNA: 3'- aaGUuUGCGaGCCUCCGGCgCGaCGA- -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 29122 | 0.68 | 0.595216 |
Target: 5'- cUCuAugGCggCGGuGGCCGCGCUcgaggGCUc -3' miRNA: 3'- aAGuUugCGa-GCCuCCGGCGCGA-----CGA- -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 136608 | 0.68 | 0.646619 |
Target: 5'- -gCGGccGCGCUCGGAguGGCUGCgGCaGCUg -3' miRNA: 3'- aaGUU--UGCGAGCCU--CCGGCG-CGaCGA- -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 122916 | 0.68 | 0.646619 |
Target: 5'- cUUC-AACGUgCGGcAGGCCaCGCUGCg -3' miRNA: 3'- -AAGuUUGCGaGCC-UCCGGcGCGACGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 101421 | 0.67 | 0.697722 |
Target: 5'- -aCGGGCGCcagCGGc-GCCGCGUUGCc -3' miRNA: 3'- aaGUUUGCGa--GCCucCGGCGCGACGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 40454 | 0.67 | 0.687576 |
Target: 5'- -gCGcACGC-CGGAGGCgGCGCacGCa -3' miRNA: 3'- aaGUuUGCGaGCCUCCGgCGCGa-CGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 85787 | 0.67 | 0.667155 |
Target: 5'- -gCAAGCGCgCGGA---CGCGCUGCUg -3' miRNA: 3'- aaGUUUGCGaGCCUccgGCGCGACGA- -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 42446 | 0.67 | 0.667155 |
Target: 5'- -cCGAGCGCagcaGcGAGGCCGCGCcGUc -3' miRNA: 3'- aaGUUUGCGag--C-CUCCGGCGCGaCGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 136015 | 0.67 | 0.667155 |
Target: 5'- ---cGGCGCUggCGGccgcGGGCCGCGCgGCg -3' miRNA: 3'- aaguUUGCGA--GCC----UCCGGCGCGaCGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 86018 | 0.67 | 0.687576 |
Target: 5'- cUUGGugGCggCGGccucgcuGGCCGUGCUGCc -3' miRNA: 3'- aAGUUugCGa-GCCu------CCGGCGCGACGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 13025 | 0.67 | 0.707811 |
Target: 5'- -aCAcGCGC-CGGgacAGGCCGCGUuuaUGCa -3' miRNA: 3'- aaGUuUGCGaGCC---UCCGGCGCG---ACGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 21642 | 0.67 | 0.677384 |
Target: 5'- gUCAAGCGcCUCGccGuGCUGCGgCUGCUg -3' miRNA: 3'- aAGUUUGC-GAGCcuC-CGGCGC-GACGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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