miRNA display CGI


Results 61 - 80 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25035 5' -58.6 NC_005336.1 + 125734 0.67 0.687576
Target:  5'- -cCAggUGCUC-GAGGCgGCGCgGCc -3'
miRNA:   3'- aaGUuuGCGAGcCUCCGgCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 74512 0.67 0.667155
Target:  5'- cUCGcGCGcCUCGGA-GCCGCGC-GCc -3'
miRNA:   3'- aAGUuUGC-GAGCCUcCGGCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 21642 0.67 0.677384
Target:  5'- gUCAAGCGcCUCGccGuGCUGCGgCUGCUg -3'
miRNA:   3'- aAGUUUGC-GAGCcuC-CGGCGC-GACGA- -5'
25035 5' -58.6 NC_005336.1 + 101463 0.67 0.667155
Target:  5'- -gCGGACGCgaagcUGGAGGCgGUGCgcggGCUc -3'
miRNA:   3'- aaGUUUGCGa----GCCUCCGgCGCGa---CGA- -5'
25035 5' -58.6 NC_005336.1 + 14992 0.67 0.687576
Target:  5'- -cCGAGCGC-CGGgccucGGGCuCGCGCgGCg -3'
miRNA:   3'- aaGUUUGCGaGCC-----UCCG-GCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 44252 0.67 0.697722
Target:  5'- ---uGGCGCU-GGAGGCgCGCGCgcgcgGCg -3'
miRNA:   3'- aaguUUGCGAgCCUCCG-GCGCGa----CGa -5'
25035 5' -58.6 NC_005336.1 + 13025 0.67 0.707811
Target:  5'- -aCAcGCGC-CGGgacAGGCCGCGUuuaUGCa -3'
miRNA:   3'- aaGUuUGCGaGCC---UCCGGCGCG---ACGa -5'
25035 5' -58.6 NC_005336.1 + 44128 0.67 0.65587
Target:  5'- --gGAGCGCUCGcGgccgaguGGGCCgacGCGCUGCc -3'
miRNA:   3'- aagUUUGCGAGC-C-------UCCGG---CGCGACGa -5'
25035 5' -58.6 NC_005336.1 + 70681 0.67 0.667155
Target:  5'- ---cGGCGgaCUCGGAGGCCauGCGCcgGCUg -3'
miRNA:   3'- aaguUUGC--GAGCCUCCGG--CGCGa-CGA- -5'
25035 5' -58.6 NC_005336.1 + 54181 0.67 0.656897
Target:  5'- -cCGGGCGCggUCGGcGGcGCCGCGCgacgGCg -3'
miRNA:   3'- aaGUUUGCG--AGCC-UC-CGGCGCGa---CGa -5'
25035 5' -58.6 NC_005336.1 + 16761 0.67 0.656897
Target:  5'- gUCGAAguUGCUCGcGAGGUCGCGgacgcggucuguCUGCg -3'
miRNA:   3'- aAGUUU--GCGAGC-CUCCGGCGC------------GACGa -5'
25035 5' -58.6 NC_005336.1 + 98988 0.67 0.656897
Target:  5'- -aCAAcGCGCUCGuugaguGGGCCGCGC-GCa -3'
miRNA:   3'- aaGUU-UGCGAGCc-----UCCGGCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 67830 0.67 0.656897
Target:  5'- -gCGGGCGCgccgCGGuGGUCGCGCUccacgaGCa -3'
miRNA:   3'- aaGUUUGCGa---GCCuCCGGCGCGA------CGa -5'
25035 5' -58.6 NC_005336.1 + 136015 0.67 0.667155
Target:  5'- ---cGGCGCUggCGGccgcGGGCCGCGCgGCg -3'
miRNA:   3'- aaguUUGCGA--GCC----UCCGGCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 59676 0.66 0.747428
Target:  5'- aUCAAcgagacGCGCgccaCGGAGGgCgucuacggGCGCUGCUa -3'
miRNA:   3'- aAGUU------UGCGa---GCCUCCgG--------CGCGACGA- -5'
25035 5' -58.6 NC_005336.1 + 116595 0.66 0.766661
Target:  5'- -aCucGCGCUCGGgcAGcGCCGCGaaGCg -3'
miRNA:   3'- aaGuuUGCGAGCC--UC-CGGCGCgaCGa -5'
25035 5' -58.6 NC_005336.1 + 136232 0.66 0.766661
Target:  5'- -gCAGGCuGCUCGGcGcGCuCGCGCUGgUg -3'
miRNA:   3'- aaGUUUG-CGAGCCuC-CG-GCGCGACgA- -5'
25035 5' -58.6 NC_005336.1 + 95589 0.66 0.7571
Target:  5'- cUCGGGCGCggGGucucGCCGCGCggGCa -3'
miRNA:   3'- aAGUUUGCGagCCuc--CGGCGCGa-CGa -5'
25035 5' -58.6 NC_005336.1 + 75144 0.66 0.736671
Target:  5'- gUCGAgcgccgggaagcgGCGCUCGGGcgcGGCucCGCGCaGCUg -3'
miRNA:   3'- aAGUU-------------UGCGAGCCU---CCG--GCGCGaCGA- -5'
25035 5' -58.6 NC_005336.1 + 453 0.66 0.737654
Target:  5'- cUCGcgUGCcgCGGGcGGCCGCGCguccGCg -3'
miRNA:   3'- aAGUuuGCGa-GCCU-CCGGCGCGa---CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.