miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25035 5' -58.6 NC_005336.1 + 70681 0.67 0.667155
Target:  5'- ---cGGCGgaCUCGGAGGCCauGCGCcgGCUg -3'
miRNA:   3'- aaguUUGC--GAGCCUCCGG--CGCGa-CGA- -5'
25035 5' -58.6 NC_005336.1 + 74512 0.67 0.667155
Target:  5'- cUCGcGCGcCUCGGA-GCCGCGC-GCc -3'
miRNA:   3'- aAGUuUGC-GAGCCUcCGGCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 74852 0.68 0.626036
Target:  5'- gUUCGcGCGCUgcgCGGcGcGCCuGCGCUGCUg -3'
miRNA:   3'- -AAGUuUGCGA---GCCuC-CGG-CGCGACGA- -5'
25035 5' -58.6 NC_005336.1 + 75144 0.66 0.736671
Target:  5'- gUCGAgcgccgggaagcgGCGCUCGGGcgcGGCucCGCGCaGCUg -3'
miRNA:   3'- aAGUU-------------UGCGAGCCU---CCG--GCGCGaCGA- -5'
25035 5' -58.6 NC_005336.1 + 75912 0.68 0.646619
Target:  5'- cUCGAAgGCgaaGGuGGCCGCGaUGCg -3'
miRNA:   3'- aAGUUUgCGag-CCuCCGGCGCgACGa -5'
25035 5' -58.6 NC_005336.1 + 75968 0.69 0.534494
Target:  5'- -aCuuGCGCUCcauGGcGGCCGCGCgGCg -3'
miRNA:   3'- aaGuuUGCGAG---CCuCCGGCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 78903 0.73 0.361946
Target:  5'- -gCGGAUGCg-GGAGGUCGCGCgGCUg -3'
miRNA:   3'- aaGUUUGCGagCCUCCGGCGCGaCGA- -5'
25035 5' -58.6 NC_005336.1 + 85787 0.67 0.667155
Target:  5'- -gCAAGCGCgCGGA---CGCGCUGCUg -3'
miRNA:   3'- aaGUUUGCGaGCCUccgGCGCGACGA- -5'
25035 5' -58.6 NC_005336.1 + 86018 0.67 0.687576
Target:  5'- cUUGGugGCggCGGccucgcuGGCCGUGCUGCc -3'
miRNA:   3'- aAGUUugCGa-GCCu------CCGGCGCGACGa -5'
25035 5' -58.6 NC_005336.1 + 86392 0.66 0.766661
Target:  5'- cUCAcGGCGUUgGGcacGGUCGCGUUGCg -3'
miRNA:   3'- aAGU-UUGCGAgCCu--CCGGCGCGACGa -5'
25035 5' -58.6 NC_005336.1 + 89108 0.68 0.605472
Target:  5'- -cCGcGCGCgCGGAGGCCGaGCgGCUc -3'
miRNA:   3'- aaGUuUGCGaGCCUCCGGCgCGaCGA- -5'
25035 5' -58.6 NC_005336.1 + 90244 0.7 0.514713
Target:  5'- -gCAGcgGCGCUCagucucGGGGCCGCcGCUGCa -3'
miRNA:   3'- aaGUU--UGCGAGc-----CUCCGGCG-CGACGa -5'
25035 5' -58.6 NC_005336.1 + 93405 0.68 0.636329
Target:  5'- --gAAGCGCUC-GAGGUCGUGgaGCa -3'
miRNA:   3'- aagUUUGCGAGcCUCCGGCGCgaCGa -5'
25035 5' -58.6 NC_005336.1 + 93919 0.67 0.707811
Target:  5'- cUCAugcccGCGCUCauggaGGAGGCgggGUGCUGCg -3'
miRNA:   3'- aAGUu----UGCGAG-----CCUCCGg--CGCGACGa -5'
25035 5' -58.6 NC_005336.1 + 95589 0.66 0.7571
Target:  5'- cUCGGGCGCggGGucucGCCGCGCggGCa -3'
miRNA:   3'- aAGUUUGCGagCCuc--CGGCGCGa-CGa -5'
25035 5' -58.6 NC_005336.1 + 97567 0.68 0.626036
Target:  5'- -gCGcGCGCUccaCGGcGGCCGCGgUGCg -3'
miRNA:   3'- aaGUuUGCGA---GCCuCCGGCGCgACGa -5'
25035 5' -58.6 NC_005336.1 + 98038 0.66 0.7571
Target:  5'- --uGGACGCgcucgCGGuGGCCGCgGCcgUGCUc -3'
miRNA:   3'- aagUUUGCGa----GCCuCCGGCG-CG--ACGA- -5'
25035 5' -58.6 NC_005336.1 + 98580 0.66 0.747428
Target:  5'- gUUCcuGCGCcagagcaacgCGGccacGGUCGCGCUGCUg -3'
miRNA:   3'- -AAGuuUGCGa---------GCCu---CCGGCGCGACGA- -5'
25035 5' -58.6 NC_005336.1 + 98988 0.67 0.656897
Target:  5'- -aCAAcGCGCUCGuugaguGGGCCGCGC-GCa -3'
miRNA:   3'- aaGUU-UGCGAGCc-----UCCGGCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 99478 0.68 0.640446
Target:  5'- -gCGAGCGCUCcauggaggacaucguGGAgaaucgcgcGGCCGCGCgGCg -3'
miRNA:   3'- aaGUUUGCGAG---------------CCU---------CCGGCGCGaCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.