Results 61 - 80 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25035 | 5' | -58.6 | NC_005336.1 | + | 100775 | 0.7 | 0.524568 |
Target: 5'- -cCAcGCGCUUcgaGGAGGUCGCGCgccgggGCUc -3' miRNA: 3'- aaGUuUGCGAG---CCUCCGGCGCGa-----CGA- -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 101421 | 0.67 | 0.697722 |
Target: 5'- -aCGGGCGCcagCGGc-GCCGCGUUGCc -3' miRNA: 3'- aaGUUUGCGa--GCCucCGGCGCGACGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 101463 | 0.67 | 0.667155 |
Target: 5'- -gCGGACGCgaagcUGGAGGCgGUGCgcggGCUc -3' miRNA: 3'- aaGUUUGCGa----GCCUCCGgCGCGa---CGA- -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 103393 | 0.68 | 0.614719 |
Target: 5'- -gCGAGCGCcuuucgcgaggagUgGGAGGCCGUGCgcgcGCUc -3' miRNA: 3'- aaGUUUGCG-------------AgCCUCCGGCGCGa---CGA- -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 107448 | 0.73 | 0.353986 |
Target: 5'- -gCGAGCGUgaCGGAGGCgCGCGCgGCg -3' miRNA: 3'- aaGUUUGCGa-GCCUCCG-GCGCGaCGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 110823 | 0.66 | 0.717836 |
Target: 5'- -aCAcGGCGC-CGGAcaGGuCUGCGCUGCg -3' miRNA: 3'- aaGU-UUGCGaGCCU--CC-GGCGCGACGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 112070 | 0.7 | 0.524568 |
Target: 5'- ---cAGCGCUC-GAGGUCGCGgUGCUc -3' miRNA: 3'- aaguUUGCGAGcCUCCGGCGCgACGA- -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 116595 | 0.66 | 0.766661 |
Target: 5'- -aCucGCGCUCGGgcAGcGCCGCGaaGCg -3' miRNA: 3'- aaGuuUGCGAGCC--UC-CGGCGCgaCGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 118812 | 0.73 | 0.330855 |
Target: 5'- -aCAcuGACGCggCGGAGGCUGCGC-GCa -3' miRNA: 3'- aaGU--UUGCGa-GCCUCCGGCGCGaCGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 121830 | 0.68 | 0.626036 |
Target: 5'- --gGAGCacuGCUCGGAGGa-GUGCUGCa -3' miRNA: 3'- aagUUUG---CGAGCCUCCggCGCGACGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 122916 | 0.68 | 0.646619 |
Target: 5'- cUUC-AACGUgCGGcAGGCCaCGCUGCg -3' miRNA: 3'- -AAGuUUGCGaGCC-UCCGGcGCGACGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 124873 | 0.76 | 0.232065 |
Target: 5'- -aCAGGCGCUCGc-GGCCGCGCgGCg -3' miRNA: 3'- aaGUUUGCGAGCcuCCGGCGCGaCGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 124906 | 0.7 | 0.504935 |
Target: 5'- -cCAAcuGCGC-CGGAGGCgCGCGC-GCg -3' miRNA: 3'- aaGUU--UGCGaGCCUCCG-GCGCGaCGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 125734 | 0.67 | 0.687576 |
Target: 5'- -cCAggUGCUC-GAGGCgGCGCgGCc -3' miRNA: 3'- aaGUuuGCGAGcCUCCGgCGCGaCGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 127638 | 0.71 | 0.438985 |
Target: 5'- aUCgAGACGCU-GGuGGCCGCcgGCUGCg -3' miRNA: 3'- aAG-UUUGCGAgCCuCCGGCG--CGACGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 128102 | 0.77 | 0.210291 |
Target: 5'- -gCGAuccGCGCcugcgaggCGGAGGUCGCGCUGCUg -3' miRNA: 3'- aaGUU---UGCGa-------GCCUCCGGCGCGACGA- -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 130036 | 0.66 | 0.717836 |
Target: 5'- -aCAcuCGCUgGuGGGGCCGCuGCUGgCUg -3' miRNA: 3'- aaGUuuGCGAgC-CUCCGGCG-CGAC-GA- -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 130154 | 0.71 | 0.457342 |
Target: 5'- cUCGgacgcAGCGCUCGcGcaccAGGCCGCGCUcGCg -3' miRNA: 3'- aAGU-----UUGCGAGC-C----UCCGGCGCGA-CGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 131106 | 0.72 | 0.395011 |
Target: 5'- -gCAugcCGCUgCGGAGGCCGCGCgacgggGCc -3' miRNA: 3'- aaGUuu-GCGA-GCCUCCGGCGCGa-----CGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 131973 | 0.69 | 0.534494 |
Target: 5'- aUCc-GCGCUacCGGAGGCCGUGC-GCc -3' miRNA: 3'- aAGuuUGCGA--GCCUCCGGCGCGaCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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