miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25035 5' -58.6 NC_005336.1 + 127638 0.71 0.438985
Target:  5'- aUCgAGACGCU-GGuGGCCGCcgGCUGCg -3'
miRNA:   3'- aAG-UUUGCGAgCCuCCGGCG--CGACGa -5'
25035 5' -58.6 NC_005336.1 + 125734 0.67 0.687576
Target:  5'- -cCAggUGCUC-GAGGCgGCGCgGCc -3'
miRNA:   3'- aaGUuuGCGAGcCUCCGgCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 124906 0.7 0.504935
Target:  5'- -cCAAcuGCGC-CGGAGGCgCGCGC-GCg -3'
miRNA:   3'- aaGUU--UGCGaGCCUCCG-GCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 124873 0.76 0.232065
Target:  5'- -aCAGGCGCUCGc-GGCCGCGCgGCg -3'
miRNA:   3'- aaGUUUGCGAGCcuCCGGCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 122916 0.68 0.646619
Target:  5'- cUUC-AACGUgCGGcAGGCCaCGCUGCg -3'
miRNA:   3'- -AAGuUUGCGaGCC-UCCGGcGCGACGa -5'
25035 5' -58.6 NC_005336.1 + 121830 0.68 0.626036
Target:  5'- --gGAGCacuGCUCGGAGGa-GUGCUGCa -3'
miRNA:   3'- aagUUUG---CGAGCCUCCggCGCGACGa -5'
25035 5' -58.6 NC_005336.1 + 118812 0.73 0.330855
Target:  5'- -aCAcuGACGCggCGGAGGCUGCGC-GCa -3'
miRNA:   3'- aaGU--UUGCGa-GCCUCCGGCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 116595 0.66 0.766661
Target:  5'- -aCucGCGCUCGGgcAGcGCCGCGaaGCg -3'
miRNA:   3'- aaGuuUGCGAGCC--UC-CGGCGCgaCGa -5'
25035 5' -58.6 NC_005336.1 + 112070 0.7 0.524568
Target:  5'- ---cAGCGCUC-GAGGUCGCGgUGCUc -3'
miRNA:   3'- aaguUUGCGAGcCUCCGGCGCgACGA- -5'
25035 5' -58.6 NC_005336.1 + 110823 0.66 0.717836
Target:  5'- -aCAcGGCGC-CGGAcaGGuCUGCGCUGCg -3'
miRNA:   3'- aaGU-UUGCGaGCCU--CC-GGCGCGACGa -5'
25035 5' -58.6 NC_005336.1 + 107448 0.73 0.353986
Target:  5'- -gCGAGCGUgaCGGAGGCgCGCGCgGCg -3'
miRNA:   3'- aaGUUUGCGa-GCCUCCG-GCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 103393 0.68 0.614719
Target:  5'- -gCGAGCGCcuuucgcgaggagUgGGAGGCCGUGCgcgcGCUc -3'
miRNA:   3'- aaGUUUGCG-------------AgCCUCCGGCGCGa---CGA- -5'
25035 5' -58.6 NC_005336.1 + 101463 0.67 0.667155
Target:  5'- -gCGGACGCgaagcUGGAGGCgGUGCgcggGCUc -3'
miRNA:   3'- aaGUUUGCGa----GCCUCCGgCGCGa---CGA- -5'
25035 5' -58.6 NC_005336.1 + 101421 0.67 0.697722
Target:  5'- -aCGGGCGCcagCGGc-GCCGCGUUGCc -3'
miRNA:   3'- aaGUUUGCGa--GCCucCGGCGCGACGa -5'
25035 5' -58.6 NC_005336.1 + 100775 0.7 0.524568
Target:  5'- -cCAcGCGCUUcgaGGAGGUCGCGCgccgggGCUc -3'
miRNA:   3'- aaGUuUGCGAG---CCUCCGGCGCGa-----CGA- -5'
25035 5' -58.6 NC_005336.1 + 99478 0.68 0.640446
Target:  5'- -gCGAGCGCUCcauggaggacaucguGGAgaaucgcgcGGCCGCGCgGCg -3'
miRNA:   3'- aaGUUUGCGAG---------------CCU---------CCGGCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 98988 0.67 0.656897
Target:  5'- -aCAAcGCGCUCGuugaguGGGCCGCGC-GCa -3'
miRNA:   3'- aaGUU-UGCGAGCc-----UCCGGCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 98580 0.66 0.747428
Target:  5'- gUUCcuGCGCcagagcaacgCGGccacGGUCGCGCUGCUg -3'
miRNA:   3'- -AAGuuUGCGa---------GCCu---CCGGCGCGACGA- -5'
25035 5' -58.6 NC_005336.1 + 98038 0.66 0.7571
Target:  5'- --uGGACGCgcucgCGGuGGCCGCgGCcgUGCUc -3'
miRNA:   3'- aagUUUGCGa----GCCuCCGGCG-CG--ACGA- -5'
25035 5' -58.6 NC_005336.1 + 97567 0.68 0.626036
Target:  5'- -gCGcGCGCUccaCGGcGGCCGCGgUGCg -3'
miRNA:   3'- aaGUuUGCGA---GCCuCCGGCGCgACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.