miRNA display CGI


Results 61 - 80 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25035 5' -58.6 NC_005336.1 + 65320 0.76 0.232065
Target:  5'- --aAAGCGCUCguGGAGGagaCCGCGCUGCa -3'
miRNA:   3'- aagUUUGCGAG--CCUCC---GGCGCGACGa -5'
25035 5' -58.6 NC_005336.1 + 61469 0.72 0.395011
Target:  5'- --uGGACGCggUGGAGGCCGUGCgucGCa -3'
miRNA:   3'- aagUUUGCGa-GCCUCCGGCGCGa--CGa -5'
25035 5' -58.6 NC_005336.1 + 61351 0.71 0.429966
Target:  5'- cUgGAACaGCUCGGuGGCCGaCGCgUGCa -3'
miRNA:   3'- aAgUUUG-CGAGCCuCCGGC-GCG-ACGa -5'
25035 5' -58.6 NC_005336.1 + 59676 0.66 0.747428
Target:  5'- aUCAAcgagacGCGCgccaCGGAGGgCgucuacggGCGCUGCUa -3'
miRNA:   3'- aAGUU------UGCGa---GCCUCCgG--------CGCGACGA- -5'
25035 5' -58.6 NC_005336.1 + 58785 0.67 0.706805
Target:  5'- -cCAAGCaguGCUCGGAGGaggucauCCGCGacCUGCg -3'
miRNA:   3'- aaGUUUG---CGAGCCUCC-------GGCGC--GACGa -5'
25035 5' -58.6 NC_005336.1 + 54181 0.67 0.656897
Target:  5'- -cCGGGCGCggUCGGcGGcGCCGCGCgacgGCg -3'
miRNA:   3'- aaGUUUGCG--AGCC-UC-CGGCGCGa---CGa -5'
25035 5' -58.6 NC_005336.1 + 53599 0.71 0.429966
Target:  5'- -gCGGGCGC-CGcGAGGCCGUGCUcaaGCUc -3'
miRNA:   3'- aaGUUUGCGaGC-CUCCGGCGCGA---CGA- -5'
25035 5' -58.6 NC_005336.1 + 53543 0.7 0.474209
Target:  5'- gUUCAAGCGCcccaccgaggaGGAGGCCGCGgUGg- -3'
miRNA:   3'- -AAGUUUGCGag---------CCUCCGGCGCgACga -5'
25035 5' -58.6 NC_005336.1 + 48100 0.66 0.727787
Target:  5'- --uGGACGCgCGGucgcGGCUGCGCaUGCg -3'
miRNA:   3'- aagUUUGCGaGCCu---CCGGCGCG-ACGa -5'
25035 5' -58.6 NC_005336.1 + 47583 0.77 0.20513
Target:  5'- gUCGAacgucGCGUUCGaGGGcGCCGCGCUGCa -3'
miRNA:   3'- aAGUU-----UGCGAGC-CUC-CGGCGCGACGa -5'
25035 5' -58.6 NC_005336.1 + 46141 0.72 0.386564
Target:  5'- -gCAGACGCgc-GAGGuCCGCGCUGUUg -3'
miRNA:   3'- aaGUUUGCGagcCUCC-GGCGCGACGA- -5'
25035 5' -58.6 NC_005336.1 + 44252 0.67 0.697722
Target:  5'- ---uGGCGCU-GGAGGCgCGCGCgcgcgGCg -3'
miRNA:   3'- aaguUUGCGAgCCUCCG-GCGCGa----CGa -5'
25035 5' -58.6 NC_005336.1 + 44128 0.67 0.65587
Target:  5'- --gGAGCGCUCGcGgccgaguGGGCCgacGCGCUGCc -3'
miRNA:   3'- aagUUUGCGAGC-C-------UCCGG---CGCGACGa -5'
25035 5' -58.6 NC_005336.1 + 43687 0.69 0.584988
Target:  5'- --uGGACGCgccGAGGCCGCGCguUGCg -3'
miRNA:   3'- aagUUUGCGagcCUCCGGCGCG--ACGa -5'
25035 5' -58.6 NC_005336.1 + 42446 0.67 0.667155
Target:  5'- -cCGAGCGCagcaGcGAGGCCGCGCcGUc -3'
miRNA:   3'- aaGUUUGCGag--C-CUCCGGCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 41202 0.69 0.574794
Target:  5'- gUUCAgcAGCGCgacCGu-GGCCGCGUUGCUc -3'
miRNA:   3'- -AAGU--UUGCGa--GCcuCCGGCGCGACGA- -5'
25035 5' -58.6 NC_005336.1 + 40454 0.67 0.687576
Target:  5'- -gCGcACGC-CGGAGGCgGCGCacGCa -3'
miRNA:   3'- aaGUuUGCGaGCCUCCGgCGCGa-CGa -5'
25035 5' -58.6 NC_005336.1 + 39034 0.66 0.7571
Target:  5'- cUCucGCGCaaguacgCGGAGGCgGaGCUGCa -3'
miRNA:   3'- aAGuuUGCGa------GCCUCCGgCgCGACGa -5'
25035 5' -58.6 NC_005336.1 + 38107 0.66 0.727787
Target:  5'- --gGAGCGCUCGcGcauGGCCGCGagcagcgcCUGCg -3'
miRNA:   3'- aagUUUGCGAGC-Cu--CCGGCGC--------GACGa -5'
25035 5' -58.6 NC_005336.1 + 36247 0.78 0.171999
Target:  5'- -gCAcGCGCggCGGAGGCCGCGCUcgGCg -3'
miRNA:   3'- aaGUuUGCGa-GCCUCCGGCGCGA--CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.