Results 41 - 60 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25035 | 5' | -58.6 | NC_005336.1 | + | 135955 | 0.84 | 0.063099 |
Target: 5'- -gCGGGCGCUCGGcGGCgGCGCUGCUg -3' miRNA: 3'- aaGUUUGCGAGCCuCCGgCGCGACGA- -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 61351 | 0.71 | 0.429966 |
Target: 5'- cUgGAACaGCUCGGuGGCCGaCGCgUGCa -3' miRNA: 3'- aAgUUUG-CGAGCCuCCGGC-GCG-ACGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 127638 | 0.71 | 0.438985 |
Target: 5'- aUCgAGACGCU-GGuGGCCGCcgGCUGCg -3' miRNA: 3'- aAG-UUUGCGAgCCuCCGGCG--CGACGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 74852 | 0.68 | 0.626036 |
Target: 5'- gUUCGcGCGCUgcgCGGcGcGCCuGCGCUGCUg -3' miRNA: 3'- -AAGUuUGCGA---GCCuC-CGG-CGCGACGA- -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 121830 | 0.68 | 0.626036 |
Target: 5'- --gGAGCacuGCUCGGAGGa-GUGCUGCa -3' miRNA: 3'- aagUUUG---CGAGCCUCCggCGCGACGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 89108 | 0.68 | 0.605472 |
Target: 5'- -cCGcGCGCgCGGAGGCCGaGCgGCUc -3' miRNA: 3'- aaGUuUGCGaGCCUCCGGCgCGaCGA- -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 69796 | 0.68 | 0.605472 |
Target: 5'- ---cGGCGCUCGGAcaaCGUGCUGCUg -3' miRNA: 3'- aaguUUGCGAGCCUccgGCGCGACGA- -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 29122 | 0.68 | 0.595216 |
Target: 5'- cUCuAugGCggCGGuGGCCGCGCUcgaggGCUc -3' miRNA: 3'- aAGuUugCGa-GCCuCCGGCGCGA-----CGA- -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 43687 | 0.69 | 0.584988 |
Target: 5'- --uGGACGCgccGAGGCCGCGCguUGCg -3' miRNA: 3'- aagUUUGCGagcCUCCGGCGCG--ACGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 41202 | 0.69 | 0.574794 |
Target: 5'- gUUCAgcAGCGCgacCGu-GGCCGCGUUGCUc -3' miRNA: 3'- -AAGU--UUGCGa--GCcuCCGGCGCGACGA- -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 135889 | 0.69 | 0.554536 |
Target: 5'- gUCuGGACGCgCGGcuGCCGCuGCUGCUg -3' miRNA: 3'- aAG-UUUGCGaGCCucCGGCG-CGACGA- -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 131973 | 0.69 | 0.534494 |
Target: 5'- aUCc-GCGCUacCGGAGGCCGUGC-GCc -3' miRNA: 3'- aAGuuUGCGA--GCCUCCGGCGCGaCGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 75968 | 0.69 | 0.534494 |
Target: 5'- -aCuuGCGCUCcauGGcGGCCGCGCgGCg -3' miRNA: 3'- aaGuuUGCGAG---CCuCCGGCGCGaCGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 100775 | 0.7 | 0.524568 |
Target: 5'- -cCAcGCGCUUcgaGGAGGUCGCGCgccgggGCUc -3' miRNA: 3'- aaGUuUGCGAG---CCUCCGGCGCGa-----CGA- -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 53543 | 0.7 | 0.474209 |
Target: 5'- gUUCAAGCGCcccaccgaggaGGAGGCCGCGgUGg- -3' miRNA: 3'- -AAGUUUGCGag---------CCUCCGGCGCgACga -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 59676 | 0.66 | 0.747428 |
Target: 5'- aUCAAcgagacGCGCgccaCGGAGGgCgucuacggGCGCUGCUa -3' miRNA: 3'- aAGUU------UGCGa---GCCUCCgG--------CGCGACGA- -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 95589 | 0.66 | 0.7571 |
Target: 5'- cUCGGGCGCggGGucucGCCGCGCggGCa -3' miRNA: 3'- aAGUUUGCGagCCuc--CGGCGCGa-CGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 136232 | 0.66 | 0.766661 |
Target: 5'- -gCAGGCuGCUCGGcGcGCuCGCGCUGgUg -3' miRNA: 3'- aaGUUUG-CGAGCCuC-CG-GCGCGACgA- -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 116595 | 0.66 | 0.766661 |
Target: 5'- -aCucGCGCUCGGgcAGcGCCGCGaaGCg -3' miRNA: 3'- aaGuuUGCGAGCC--UC-CGGCGCgaCGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 133656 | 1.05 | 0.002084 |
Target: 5'- gUUCAAACGCUCGGAGGCCGCGCUGCUg -3' miRNA: 3'- -AAGUUUGCGAGCCUCCGGCGCGACGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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