miRNA display CGI


Results 61 - 80 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25035 5' -58.6 NC_005336.1 + 122916 0.68 0.646619
Target:  5'- cUUC-AACGUgCGGcAGGCCaCGCUGCg -3'
miRNA:   3'- -AAGuUUGCGaGCC-UCCGGcGCGACGa -5'
25035 5' -58.6 NC_005336.1 + 99478 0.68 0.640446
Target:  5'- -gCGAGCGCUCcauggaggacaucguGGAgaaucgcgcGGCCGCGCgGCg -3'
miRNA:   3'- aaGUUUGCGAG---------------CCU---------CCGGCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 97567 0.68 0.626036
Target:  5'- -gCGcGCGCUccaCGGcGGCCGCGgUGCg -3'
miRNA:   3'- aaGUuUGCGA---GCCuCCGGCGCgACGa -5'
25035 5' -58.6 NC_005336.1 + 103393 0.68 0.614719
Target:  5'- -gCGAGCGCcuuucgcgaggagUgGGAGGCCGUGCgcgcGCUc -3'
miRNA:   3'- aaGUUUGCG-------------AgCCUCCGGCGCGa---CGA- -5'
25035 5' -58.6 NC_005336.1 + 135892 0.69 0.564641
Target:  5'- --uGGACGCgCGGcuGCCGCuGCUGCUg -3'
miRNA:   3'- aagUUUGCGaGCCucCGGCG-CGACGA- -5'
25035 5' -58.6 NC_005336.1 + 112070 0.7 0.524568
Target:  5'- ---cAGCGCUC-GAGGUCGCGgUGCUc -3'
miRNA:   3'- aaguUUGCGAGcCUCCGGCGCgACGA- -5'
25035 5' -58.6 NC_005336.1 + 86018 0.67 0.687576
Target:  5'- cUUGGugGCggCGGccucgcuGGCCGUGCUGCc -3'
miRNA:   3'- aAGUUugCGa-GCCu------CCGGCGCGACGa -5'
25035 5' -58.6 NC_005336.1 + 101421 0.67 0.697722
Target:  5'- -aCGGGCGCcagCGGc-GCCGCGUUGCc -3'
miRNA:   3'- aaGUUUGCGa--GCCucCGGCGCGACGa -5'
25035 5' -58.6 NC_005336.1 + 58785 0.67 0.706805
Target:  5'- -cCAAGCaguGCUCGGAGGaggucauCCGCGacCUGCg -3'
miRNA:   3'- aaGUUUG---CGAGCCUCC-------GGCGC--GACGa -5'
25035 5' -58.6 NC_005336.1 + 133656 1.05 0.002084
Target:  5'- gUUCAAACGCUCGGAGGCCGCGCUGCUg -3'
miRNA:   3'- -AAGUUUGCGAGCCUCCGGCGCGACGA- -5'
25035 5' -58.6 NC_005336.1 + 116595 0.66 0.766661
Target:  5'- -aCucGCGCUCGGgcAGcGCCGCGaaGCg -3'
miRNA:   3'- aaGuuUGCGAGCC--UC-CGGCGCgaCGa -5'
25035 5' -58.6 NC_005336.1 + 136232 0.66 0.766661
Target:  5'- -gCAGGCuGCUCGGcGcGCuCGCGCUGgUg -3'
miRNA:   3'- aaGUUUG-CGAGCCuC-CG-GCGCGACgA- -5'
25035 5' -58.6 NC_005336.1 + 95589 0.66 0.7571
Target:  5'- cUCGGGCGCggGGucucGCCGCGCggGCa -3'
miRNA:   3'- aAGUUUGCGagCCuc--CGGCGCGa-CGa -5'
25035 5' -58.6 NC_005336.1 + 59676 0.66 0.747428
Target:  5'- aUCAAcgagacGCGCgccaCGGAGGgCgucuacggGCGCUGCUa -3'
miRNA:   3'- aAGUU------UGCGa---GCCUCCgG--------CGCGACGA- -5'
25035 5' -58.6 NC_005336.1 + 98580 0.66 0.747428
Target:  5'- gUUCcuGCGCcagagcaacgCGGccacGGUCGCGCUGCUg -3'
miRNA:   3'- -AAGuuUGCGa---------GCCu---CCGGCGCGACGA- -5'
25035 5' -58.6 NC_005336.1 + 453 0.66 0.737654
Target:  5'- cUCGcgUGCcgCGGGcGGCCGCGCguccGCg -3'
miRNA:   3'- aAGUuuGCGa-GCCU-CCGGCGCGa---CGa -5'
25035 5' -58.6 NC_005336.1 + 75144 0.66 0.736671
Target:  5'- gUCGAgcgccgggaagcgGCGCUCGGGcgcGGCucCGCGCaGCUg -3'
miRNA:   3'- aAGUU-------------UGCGAGCCU---CCG--GCGCGaCGA- -5'
25035 5' -58.6 NC_005336.1 + 38107 0.66 0.727787
Target:  5'- --gGAGCGCUCGcGcauGGCCGCGagcagcgcCUGCg -3'
miRNA:   3'- aagUUUGCGAGC-Cu--CCGGCGC--------GACGa -5'
25035 5' -58.6 NC_005336.1 + 110823 0.66 0.717836
Target:  5'- -aCAcGGCGC-CGGAcaGGuCUGCGCUGCg -3'
miRNA:   3'- aaGU-UUGCGaGCCU--CC-GGCGCGACGa -5'
25035 5' -58.6 NC_005336.1 + 93919 0.67 0.707811
Target:  5'- cUCAugcccGCGCUCauggaGGAGGCgggGUGCUGCg -3'
miRNA:   3'- aAGUu----UGCGAG-----CCUCCGg--CGCGACGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.