miRNA display CGI


Results 81 - 95 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25035 5' -58.6 NC_005336.1 + 59676 0.66 0.747428
Target:  5'- aUCAAcgagacGCGCgccaCGGAGGgCgucuacggGCGCUGCUa -3'
miRNA:   3'- aAGUU------UGCGa---GCCUCCgG--------CGCGACGA- -5'
25035 5' -58.6 NC_005336.1 + 95589 0.66 0.7571
Target:  5'- cUCGGGCGCggGGucucGCCGCGCggGCa -3'
miRNA:   3'- aAGUUUGCGagCCuc--CGGCGCGa-CGa -5'
25035 5' -58.6 NC_005336.1 + 136232 0.66 0.766661
Target:  5'- -gCAGGCuGCUCGGcGcGCuCGCGCUGgUg -3'
miRNA:   3'- aaGUUUG-CGAGCCuC-CG-GCGCGACgA- -5'
25035 5' -58.6 NC_005336.1 + 116595 0.66 0.766661
Target:  5'- -aCucGCGCUCGGgcAGcGCCGCGaaGCg -3'
miRNA:   3'- aaGuuUGCGAGCC--UC-CGGCGCgaCGa -5'
25035 5' -58.6 NC_005336.1 + 110823 0.66 0.717836
Target:  5'- -aCAcGGCGC-CGGAcaGGuCUGCGCUGCg -3'
miRNA:   3'- aaGU-UUGCGaGCCU--CC-GGCGCGACGa -5'
25035 5' -58.6 NC_005336.1 + 93919 0.67 0.707811
Target:  5'- cUCAugcccGCGCUCauggaGGAGGCgggGUGCUGCg -3'
miRNA:   3'- aAGUu----UGCGAG-----CCUCCGg--CGCGACGa -5'
25035 5' -58.6 NC_005336.1 + 136608 0.68 0.646619
Target:  5'- -gCGGccGCGCUCGGAguGGCUGCgGCaGCUg -3'
miRNA:   3'- aaGUU--UGCGAGCCU--CCGGCG-CGaCGA- -5'
25035 5' -58.6 NC_005336.1 + 85787 0.67 0.667155
Target:  5'- -gCAAGCGCgCGGA---CGCGCUGCUg -3'
miRNA:   3'- aaGUUUGCGaGCCUccgGCGCGACGA- -5'
25035 5' -58.6 NC_005336.1 + 42446 0.67 0.667155
Target:  5'- -cCGAGCGCagcaGcGAGGCCGCGCcGUc -3'
miRNA:   3'- aaGUUUGCGag--C-CUCCGGCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 136015 0.67 0.667155
Target:  5'- ---cGGCGCUggCGGccgcGGGCCGCGCgGCg -3'
miRNA:   3'- aaguUUGCGA--GCC----UCCGGCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 40454 0.67 0.687576
Target:  5'- -gCGcACGC-CGGAGGCgGCGCacGCa -3'
miRNA:   3'- aaGUuUGCGaGCCUCCGgCGCGa-CGa -5'
25035 5' -58.6 NC_005336.1 + 86018 0.67 0.687576
Target:  5'- cUUGGugGCggCGGccucgcuGGCCGUGCUGCc -3'
miRNA:   3'- aAGUUugCGa-GCCu------CCGGCGCGACGa -5'
25035 5' -58.6 NC_005336.1 + 101421 0.67 0.697722
Target:  5'- -aCGGGCGCcagCGGc-GCCGCGUUGCc -3'
miRNA:   3'- aaGUUUGCGa--GCCucCGGCGCGACGa -5'
25035 5' -58.6 NC_005336.1 + 58785 0.67 0.706805
Target:  5'- -cCAAGCaguGCUCGGAGGaggucauCCGCGacCUGCg -3'
miRNA:   3'- aaGUUUG---CGAGCCUCC-------GGCGC--GACGa -5'
25035 5' -58.6 NC_005336.1 + 133733 0.66 0.766661
Target:  5'- -gCGAGCGCUggCGGAcuacgcgaccguGGuCCGCGCgUGCg -3'
miRNA:   3'- aaGUUUGCGA--GCCU------------CC-GGCGCG-ACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.