Results 21 - 40 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25035 | 5' | -58.6 | NC_005336.1 | + | 122916 | 0.68 | 0.646619 |
Target: 5'- cUUC-AACGUgCGGcAGGCCaCGCUGCg -3' miRNA: 3'- -AAGuUUGCGaGCC-UCCGGcGCGACGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 95589 | 0.66 | 0.7571 |
Target: 5'- cUCGGGCGCggGGucucGCCGCGCggGCa -3' miRNA: 3'- aAGUUUGCGagCCuc--CGGCGCGa-CGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 16244 | 0.73 | 0.353986 |
Target: 5'- gUCGAGCGcCUCGGGGuCCGCGCccGCg -3' miRNA: 3'- aAGUUUGC-GAGCCUCcGGCGCGa-CGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 29511 | 0.7 | 0.476102 |
Target: 5'- -gCGGACGCUCcccucgucgGcGAGGCCGUGCUGg- -3' miRNA: 3'- aaGUUUGCGAG---------C-CUCCGGCGCGACga -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 85787 | 0.67 | 0.667155 |
Target: 5'- -gCAAGCGCgCGGA---CGCGCUGCUg -3' miRNA: 3'- aaGUUUGCGaGCCUccgGCGCGACGA- -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 136232 | 0.66 | 0.766661 |
Target: 5'- -gCAGGCuGCUCGGcGcGCuCGCGCUGgUg -3' miRNA: 3'- aaGUUUG-CGAGCCuC-CG-GCGCGACgA- -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 124906 | 0.7 | 0.504935 |
Target: 5'- -cCAAcuGCGC-CGGAGGCgCGCGC-GCg -3' miRNA: 3'- aaGUU--UGCGaGCCUCCG-GCGCGaCGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 116595 | 0.66 | 0.766661 |
Target: 5'- -aCucGCGCUCGGgcAGcGCCGCGaaGCg -3' miRNA: 3'- aaGuuUGCGAGCC--UC-CGGCGCgaCGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 133733 | 0.66 | 0.766661 |
Target: 5'- -gCGAGCGCUggCGGAcuacgcgaccguGGuCCGCGCgUGCg -3' miRNA: 3'- aaGUUUGCGA--GCCU------------CC-GGCGCG-ACGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 93919 | 0.67 | 0.707811 |
Target: 5'- cUCAugcccGCGCUCauggaGGAGGCgggGUGCUGCg -3' miRNA: 3'- aAGUu----UGCGAG-----CCUCCGg--CGCGACGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 136608 | 0.68 | 0.646619 |
Target: 5'- -gCGGccGCGCUCGGAguGGCUGCgGCaGCUg -3' miRNA: 3'- aaGUU--UGCGAGCCU--CCGGCG-CGaCGA- -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 135892 | 0.69 | 0.564641 |
Target: 5'- --uGGACGCgCGGcuGCCGCuGCUGCUg -3' miRNA: 3'- aagUUUGCGaGCCucCGGCG-CGACGA- -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 40454 | 0.67 | 0.687576 |
Target: 5'- -gCGcACGC-CGGAGGCgGCGCacGCa -3' miRNA: 3'- aaGUuUGCGaGCCUCCGgCGCGa-CGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 58785 | 0.67 | 0.706805 |
Target: 5'- -cCAAGCaguGCUCGGAGGaggucauCCGCGacCUGCg -3' miRNA: 3'- aaGUUUG---CGAGCCUCC-------GGCGC--GACGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 75144 | 0.66 | 0.736671 |
Target: 5'- gUCGAgcgccgggaagcgGCGCUCGGGcgcGGCucCGCGCaGCUg -3' miRNA: 3'- aAGUU-------------UGCGAGCCU---CCG--GCGCGaCGA- -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 59676 | 0.66 | 0.747428 |
Target: 5'- aUCAAcgagacGCGCgccaCGGAGGgCgucuacggGCGCUGCUa -3' miRNA: 3'- aAGUU------UGCGa---GCCUCCgG--------CGCGACGA- -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 135955 | 0.84 | 0.063099 |
Target: 5'- -gCGGGCGCUCGGcGGCgGCGCUGCUg -3' miRNA: 3'- aaGUUUGCGAGCCuCCGgCGCGACGA- -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 118812 | 0.73 | 0.330855 |
Target: 5'- -aCAcuGACGCggCGGAGGCUGCGC-GCa -3' miRNA: 3'- aaGU--UUGCGa-GCCUCCGGCGCGaCGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 131106 | 0.72 | 0.395011 |
Target: 5'- -gCAugcCGCUgCGGAGGCCGCGCgacgggGCc -3' miRNA: 3'- aaGUuu-GCGA-GCCUCCGGCGCGa-----CGa -5' |
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25035 | 5' | -58.6 | NC_005336.1 | + | 130154 | 0.71 | 0.457342 |
Target: 5'- cUCGgacgcAGCGCUCGcGcaccAGGCCGCGCUcGCg -3' miRNA: 3'- aAGU-----UUGCGAGC-C----UCCGGCGCGA-CGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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