miRNA display CGI


Results 41 - 60 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25035 5' -58.6 NC_005336.1 + 136608 0.68 0.646619
Target:  5'- -gCGGccGCGCUCGGAguGGCUGCgGCaGCUg -3'
miRNA:   3'- aaGUU--UGCGAGCCU--CCGGCG-CGaCGA- -5'
25035 5' -58.6 NC_005336.1 + 98038 0.66 0.7571
Target:  5'- --uGGACGCgcucgCGGuGGCCGCgGCcgUGCUc -3'
miRNA:   3'- aagUUUGCGa----GCCuCCGGCG-CG--ACGA- -5'
25035 5' -58.6 NC_005336.1 + 39034 0.66 0.7571
Target:  5'- cUCucGCGCaaguacgCGGAGGCgGaGCUGCa -3'
miRNA:   3'- aAGuuUGCGa------GCCUCCGgCgCGACGa -5'
25035 5' -58.6 NC_005336.1 + 44128 0.67 0.65587
Target:  5'- --gGAGCGCUCGcGgccgaguGGGCCgacGCGCUGCc -3'
miRNA:   3'- aagUUUGCGAGC-C-------UCCGG---CGCGACGa -5'
25035 5' -58.6 NC_005336.1 + 86392 0.66 0.766661
Target:  5'- cUCAcGGCGUUgGGcacGGUCGCGUUGCg -3'
miRNA:   3'- aAGU-UUGCGAgCCu--CCGGCGCGACGa -5'
25035 5' -58.6 NC_005336.1 + 121830 0.68 0.626036
Target:  5'- --gGAGCacuGCUCGGAGGa-GUGCUGCa -3'
miRNA:   3'- aagUUUG---CGAGCCUCCggCGCGACGa -5'
25035 5' -58.6 NC_005336.1 + 74852 0.68 0.626036
Target:  5'- gUUCGcGCGCUgcgCGGcGcGCCuGCGCUGCUg -3'
miRNA:   3'- -AAGUuUGCGA---GCCuC-CGG-CGCGACGA- -5'
25035 5' -58.6 NC_005336.1 + 133966 0.68 0.626036
Target:  5'- cUUCcuGCGC-CGGcuGGCCGCGCgcgcgGCg -3'
miRNA:   3'- -AAGuuUGCGaGCCu-CCGGCGCGa----CGa -5'
25035 5' -58.6 NC_005336.1 + 93405 0.68 0.636329
Target:  5'- --gAAGCGCUC-GAGGUCGUGgaGCa -3'
miRNA:   3'- aagUUUGCGAGcCUCCGGCGCgaCGa -5'
25035 5' -58.6 NC_005336.1 + 6717 0.66 0.7571
Target:  5'- -gCAGGCGUUUGGGuucGcGCCGCGCUcgaGCa -3'
miRNA:   3'- aaGUUUGCGAGCCU---C-CGGCGCGA---CGa -5'
25035 5' -58.6 NC_005336.1 + 16381 0.66 0.747428
Target:  5'- aUCAcGAUGUgcgCGGAGacGCCGCGCcgGCUc -3'
miRNA:   3'- aAGU-UUGCGa--GCCUC--CGGCGCGa-CGA- -5'
25035 5' -58.6 NC_005336.1 + 53543 0.7 0.474209
Target:  5'- gUUCAAGCGCcccaccgaggaGGAGGCCGCGgUGg- -3'
miRNA:   3'- -AAGUUUGCGag---------CCUCCGGCGCgACga -5'
25035 5' -58.6 NC_005336.1 + 89108 0.68 0.605472
Target:  5'- -cCGcGCGCgCGGAGGCCGaGCgGCUc -3'
miRNA:   3'- aaGUuUGCGaGCCUCCGGCgCGaCGA- -5'
25035 5' -58.6 NC_005336.1 + 127638 0.71 0.438985
Target:  5'- aUCgAGACGCU-GGuGGCCGCcgGCUGCg -3'
miRNA:   3'- aAG-UUUGCGAgCCuCCGGCG--CGACGa -5'
25035 5' -58.6 NC_005336.1 + 61351 0.71 0.429966
Target:  5'- cUgGAACaGCUCGGuGGCCGaCGCgUGCa -3'
miRNA:   3'- aAgUUUG-CGAGCCuCCGGC-GCG-ACGa -5'
25035 5' -58.6 NC_005336.1 + 53599 0.71 0.429966
Target:  5'- -gCGGGCGC-CGcGAGGCCGUGCUcaaGCUc -3'
miRNA:   3'- aaGUUUGCGaGC-CUCCGGCGCGA---CGA- -5'
25035 5' -58.6 NC_005336.1 + 78903 0.73 0.361946
Target:  5'- -gCGGAUGCg-GGAGGUCGCGCgGCUg -3'
miRNA:   3'- aaGUUUGCGagCCUCCGGCGCGaCGA- -5'
25035 5' -58.6 NC_005336.1 + 75912 0.68 0.646619
Target:  5'- cUCGAAgGCgaaGGuGGCCGCGaUGCg -3'
miRNA:   3'- aAGUUUgCGag-CCuCCGGCGCgACGa -5'
25035 5' -58.6 NC_005336.1 + 133348 0.66 0.727787
Target:  5'- cUCGAucuCGC-CGGAGGCgGCgGCgGCg -3'
miRNA:   3'- aAGUUu--GCGaGCCUCCGgCG-CGaCGa -5'
25035 5' -58.6 NC_005336.1 + 453 0.66 0.737654
Target:  5'- cUCGcgUGCcgCGGGcGGCCGCGCguccGCg -3'
miRNA:   3'- aAGUuuGCGa-GCCU-CCGGCGCGa---CGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.