miRNA display CGI


Results 61 - 80 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25035 5' -58.6 NC_005336.1 + 78903 0.73 0.361946
Target:  5'- -gCGGAUGCg-GGAGGUCGCGCgGCUg -3'
miRNA:   3'- aaGUUUGCGagCCUCCGGCGCGaCGA- -5'
25035 5' -58.6 NC_005336.1 + 65320 0.76 0.232065
Target:  5'- --aAAGCGCUCguGGAGGagaCCGCGCUGCa -3'
miRNA:   3'- aagUUUGCGAG--CCUCC---GGCGCGACGa -5'
25035 5' -58.6 NC_005336.1 + 128102 0.77 0.210291
Target:  5'- -gCGAuccGCGCcugcgaggCGGAGGUCGCGCUGCUg -3'
miRNA:   3'- aaGUU---UGCGa-------GCCUCCGGCGCGACGA- -5'
25035 5' -58.6 NC_005336.1 + 121830 0.68 0.626036
Target:  5'- --gGAGCacuGCUCGGAGGa-GUGCUGCa -3'
miRNA:   3'- aagUUUG---CGAGCCUCCggCGCGACGa -5'
25035 5' -58.6 NC_005336.1 + 74852 0.68 0.626036
Target:  5'- gUUCGcGCGCUgcgCGGcGcGCCuGCGCUGCUg -3'
miRNA:   3'- -AAGUuUGCGA---GCCuC-CGG-CGCGACGA- -5'
25035 5' -58.6 NC_005336.1 + 133966 0.68 0.626036
Target:  5'- cUUCcuGCGC-CGGcuGGCCGCGCgcgcgGCg -3'
miRNA:   3'- -AAGuuUGCGaGCCu-CCGGCGCGa----CGa -5'
25035 5' -58.6 NC_005336.1 + 14090 0.66 0.727787
Target:  5'- cUCGcGCGCUCauGAGGCaCGUGCgGCa -3'
miRNA:   3'- aAGUuUGCGAGc-CUCCG-GCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 48100 0.66 0.727787
Target:  5'- --uGGACGCgCGGucgcGGCUGCGCaUGCg -3'
miRNA:   3'- aagUUUGCGaGCCu---CCGGCGCG-ACGa -5'
25035 5' -58.6 NC_005336.1 + 130036 0.66 0.717836
Target:  5'- -aCAcuCGCUgGuGGGGCCGCuGCUGgCUg -3'
miRNA:   3'- aaGUuuGCGAgC-CUCCGGCG-CGAC-GA- -5'
25035 5' -58.6 NC_005336.1 + 13025 0.67 0.707811
Target:  5'- -aCAcGCGC-CGGgacAGGCCGCGUuuaUGCa -3'
miRNA:   3'- aaGUuUGCGaGCC---UCCGGCGCG---ACGa -5'
25035 5' -58.6 NC_005336.1 + 44252 0.67 0.697722
Target:  5'- ---uGGCGCU-GGAGGCgCGCGCgcgcgGCg -3'
miRNA:   3'- aaguUUGCGAgCCUCCG-GCGCGa----CGa -5'
25035 5' -58.6 NC_005336.1 + 14992 0.67 0.687576
Target:  5'- -cCGAGCGC-CGGgccucGGGCuCGCGCgGCg -3'
miRNA:   3'- aaGUUUGCGaGCC-----UCCG-GCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 125734 0.67 0.687576
Target:  5'- -cCAggUGCUC-GAGGCgGCGCgGCc -3'
miRNA:   3'- aaGUuuGCGAGcCUCCGgCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 21642 0.67 0.677384
Target:  5'- gUCAAGCGcCUCGccGuGCUGCGgCUGCUg -3'
miRNA:   3'- aAGUUUGC-GAGCcuC-CGGCGC-GACGA- -5'
25035 5' -58.6 NC_005336.1 + 74512 0.67 0.667155
Target:  5'- cUCGcGCGcCUCGGA-GCCGCGC-GCc -3'
miRNA:   3'- aAGUuUGC-GAGCCUcCGGCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 136015 0.67 0.667155
Target:  5'- ---cGGCGCUggCGGccgcGGGCCGCGCgGCg -3'
miRNA:   3'- aaguUUGCGA--GCC----UCCGGCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 44128 0.67 0.65587
Target:  5'- --gGAGCGCUCGcGgccgaguGGGCCgacGCGCUGCc -3'
miRNA:   3'- aagUUUGCGAGC-C-------UCCGG---CGCGACGa -5'
25035 5' -58.6 NC_005336.1 + 75912 0.68 0.646619
Target:  5'- cUCGAAgGCgaaGGuGGCCGCGaUGCg -3'
miRNA:   3'- aAGUUUgCGag-CCuCCGGCGCgACGa -5'
25035 5' -58.6 NC_005336.1 + 136608 0.68 0.646619
Target:  5'- -gCGGccGCGCUCGGAguGGCUGCgGCaGCUg -3'
miRNA:   3'- aaGUU--UGCGAGCCU--CCGGCG-CGaCGA- -5'
25035 5' -58.6 NC_005336.1 + 93405 0.68 0.636329
Target:  5'- --gAAGCGCUC-GAGGUCGUGgaGCa -3'
miRNA:   3'- aagUUUGCGAGcCUCCGGCGCgaCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.