miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25035 5' -58.6 NC_005336.1 + 110823 0.66 0.717836
Target:  5'- -aCAcGGCGC-CGGAcaGGuCUGCGCUGCg -3'
miRNA:   3'- aaGU-UUGCGaGCCU--CC-GGCGCGACGa -5'
25035 5' -58.6 NC_005336.1 + 13025 0.67 0.707811
Target:  5'- -aCAcGCGC-CGGgacAGGCCGCGUuuaUGCa -3'
miRNA:   3'- aaGUuUGCGaGCC---UCCGGCGCG---ACGa -5'
25035 5' -58.6 NC_005336.1 + 93919 0.67 0.707811
Target:  5'- cUCAugcccGCGCUCauggaGGAGGCgggGUGCUGCg -3'
miRNA:   3'- aAGUu----UGCGAG-----CCUCCGg--CGCGACGa -5'
25035 5' -58.6 NC_005336.1 + 58785 0.67 0.706805
Target:  5'- -cCAAGCaguGCUCGGAGGaggucauCCGCGacCUGCg -3'
miRNA:   3'- aaGUUUG---CGAGCCUCC-------GGCGC--GACGa -5'
25035 5' -58.6 NC_005336.1 + 101421 0.67 0.697722
Target:  5'- -aCGGGCGCcagCGGc-GCCGCGUUGCc -3'
miRNA:   3'- aaGUUUGCGa--GCCucCGGCGCGACGa -5'
25035 5' -58.6 NC_005336.1 + 44252 0.67 0.697722
Target:  5'- ---uGGCGCU-GGAGGCgCGCGCgcgcgGCg -3'
miRNA:   3'- aaguUUGCGAgCCUCCG-GCGCGa----CGa -5'
25035 5' -58.6 NC_005336.1 + 125734 0.67 0.687576
Target:  5'- -cCAggUGCUC-GAGGCgGCGCgGCc -3'
miRNA:   3'- aaGUuuGCGAGcCUCCGgCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 40454 0.67 0.687576
Target:  5'- -gCGcACGC-CGGAGGCgGCGCacGCa -3'
miRNA:   3'- aaGUuUGCGaGCCUCCGgCGCGa-CGa -5'
25035 5' -58.6 NC_005336.1 + 86018 0.67 0.687576
Target:  5'- cUUGGugGCggCGGccucgcuGGCCGUGCUGCc -3'
miRNA:   3'- aAGUUugCGa-GCCu------CCGGCGCGACGa -5'
25035 5' -58.6 NC_005336.1 + 14992 0.67 0.687576
Target:  5'- -cCGAGCGC-CGGgccucGGGCuCGCGCgGCg -3'
miRNA:   3'- aaGUUUGCGaGCC-----UCCG-GCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 21642 0.67 0.677384
Target:  5'- gUCAAGCGcCUCGccGuGCUGCGgCUGCUg -3'
miRNA:   3'- aAGUUUGC-GAGCcuC-CGGCGC-GACGA- -5'
25035 5' -58.6 NC_005336.1 + 74512 0.67 0.667155
Target:  5'- cUCGcGCGcCUCGGA-GCCGCGC-GCc -3'
miRNA:   3'- aAGUuUGC-GAGCCUcCGGCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 136015 0.67 0.667155
Target:  5'- ---cGGCGCUggCGGccgcGGGCCGCGCgGCg -3'
miRNA:   3'- aaguUUGCGA--GCC----UCCGGCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 101463 0.67 0.667155
Target:  5'- -gCGGACGCgaagcUGGAGGCgGUGCgcggGCUc -3'
miRNA:   3'- aaGUUUGCGa----GCCUCCGgCGCGa---CGA- -5'
25035 5' -58.6 NC_005336.1 + 70681 0.67 0.667155
Target:  5'- ---cGGCGgaCUCGGAGGCCauGCGCcgGCUg -3'
miRNA:   3'- aaguUUGC--GAGCCUCCGG--CGCGa-CGA- -5'
25035 5' -58.6 NC_005336.1 + 85787 0.67 0.667155
Target:  5'- -gCAAGCGCgCGGA---CGCGCUGCUg -3'
miRNA:   3'- aaGUUUGCGaGCCUccgGCGCGACGA- -5'
25035 5' -58.6 NC_005336.1 + 136015 0.67 0.667155
Target:  5'- ---cGGCGCUggCGGccgcGGGCCGCGCgGCg -3'
miRNA:   3'- aaguUUGCGA--GCC----UCCGGCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 42446 0.67 0.667155
Target:  5'- -cCGAGCGCagcaGcGAGGCCGCGCcGUc -3'
miRNA:   3'- aaGUUUGCGag--C-CUCCGGCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 54181 0.67 0.656897
Target:  5'- -cCGGGCGCggUCGGcGGcGCCGCGCgacgGCg -3'
miRNA:   3'- aaGUUUGCG--AGCC-UC-CGGCGCGa---CGa -5'
25035 5' -58.6 NC_005336.1 + 16761 0.67 0.656897
Target:  5'- gUCGAAguUGCUCGcGAGGUCGCGgacgcggucuguCUGCg -3'
miRNA:   3'- aAGUUU--GCGAGC-CUCCGGCGC------------GACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.