miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25036 3' -62.3 NC_005336.1 + 136231 0.66 0.662993
Target:  5'- cGCaGGCUGCuCGGCgcgcucgCGCUGGUggCGGc -3'
miRNA:   3'- -CGgCCGAUG-GCCGa------GUGGCCGagGCC- -5'
25036 3' -62.3 NC_005336.1 + 65785 0.66 0.614301
Target:  5'- cCCGGCUGCCGuGUUCGuagaCGaCUCCGu -3'
miRNA:   3'- cGGCCGAUGGC-CGAGUg---GCcGAGGCc -5'
25036 3' -62.3 NC_005336.1 + 36573 0.66 0.624042
Target:  5'- cGCgGGCUugC-GCaCGCCGGCgCCGa -3'
miRNA:   3'- -CGgCCGAugGcCGaGUGGCCGaGGCc -5'
25036 3' -62.3 NC_005336.1 + 8710 0.66 0.624042
Target:  5'- -gCGGCaugcaGCCGGCgguggggacgCACUGGUUUCGGc -3'
miRNA:   3'- cgGCCGa----UGGCCGa---------GUGGCCGAGGCC- -5'
25036 3' -62.3 NC_005336.1 + 103432 0.66 0.614301
Target:  5'- cGCCGGCgcaAgCGGCUCGgCuuCUUCGGg -3'
miRNA:   3'- -CGGCCGa--UgGCCGAGUgGccGAGGCC- -5'
25036 3' -62.3 NC_005336.1 + 10704 0.66 0.633788
Target:  5'- cGUCGGCgg-CGGCUCGuCCcaGGCcugCCGGc -3'
miRNA:   3'- -CGGCCGaugGCCGAGU-GG--CCGa--GGCC- -5'
25036 3' -62.3 NC_005336.1 + 38658 0.66 0.643534
Target:  5'- cGCUgGGCU-UCGGCUCGgccgaCGGCUCCc- -3'
miRNA:   3'- -CGG-CCGAuGGCCGAGUg----GCCGAGGcc -5'
25036 3' -62.3 NC_005336.1 + 131964 0.66 0.643534
Target:  5'- cGCCGGCgcauCCGcGCU-ACCGGaggCCGu -3'
miRNA:   3'- -CGGCCGau--GGC-CGAgUGGCCga-GGCc -5'
25036 3' -62.3 NC_005336.1 + 69775 0.66 0.662993
Target:  5'- cGCCcGCUGCUGGaccugUGCCGGCgCuCGGa -3'
miRNA:   3'- -CGGcCGAUGGCCga---GUGGCCGaG-GCC- -5'
25036 3' -62.3 NC_005336.1 + 42299 0.66 0.653271
Target:  5'- cGCCGGCaagucgugCGGCUgCGCCucgaGGCUgCGGc -3'
miRNA:   3'- -CGGCCGaug-----GCCGA-GUGG----CCGAgGCC- -5'
25036 3' -62.3 NC_005336.1 + 74033 0.66 0.653271
Target:  5'- aGCCGGgUcUCGGCUgugCugCGcgaggcgcGCUCCGGa -3'
miRNA:   3'- -CGGCCgAuGGCCGA---GugGC--------CGAGGCC- -5'
25036 3' -62.3 NC_005336.1 + 14913 0.66 0.653271
Target:  5'- aGuuGGCUGCCcGCgCGCCGcGCggCCGc -3'
miRNA:   3'- -CggCCGAUGGcCGaGUGGC-CGa-GGCc -5'
25036 3' -62.3 NC_005336.1 + 136602 0.66 0.633788
Target:  5'- gGCCGcGCgGCCGcGCUCGgagUGGCUgCGGc -3'
miRNA:   3'- -CGGC-CGaUGGC-CGAGUg--GCCGAgGCC- -5'
25036 3' -62.3 NC_005336.1 + 64154 0.67 0.604572
Target:  5'- -gCGGCUcuuCgCGGCgcugCGUCGGCUCUGGg -3'
miRNA:   3'- cgGCCGAu--G-GCCGa---GUGGCCGAGGCC- -5'
25036 3' -62.3 NC_005336.1 + 102562 0.67 0.575522
Target:  5'- gGCCGcGC-ACCuGGC-CACCGcGCUCgUGGa -3'
miRNA:   3'- -CGGC-CGaUGG-CCGaGUGGC-CGAG-GCC- -5'
25036 3' -62.3 NC_005336.1 + 130136 0.67 0.585176
Target:  5'- cGCgCGuGCcGCCGGCUgAUCGcGCUUgGGg -3'
miRNA:   3'- -CG-GC-CGaUGGCCGAgUGGC-CGAGgCC- -5'
25036 3' -62.3 NC_005336.1 + 11231 0.67 0.585176
Target:  5'- -aCGGC-GCCGGCgugcuugaUCACCGGCaCCa- -3'
miRNA:   3'- cgGCCGaUGGCCG--------AGUGGCCGaGGcc -5'
25036 3' -62.3 NC_005336.1 + 99125 0.67 0.598743
Target:  5'- aGCCGGCUGCacuuCGGaCUCACgcacgccugggugcgCGGCgCCGc -3'
miRNA:   3'- -CGGCCGAUG----GCC-GAGUG---------------GCCGaGGCc -5'
25036 3' -62.3 NC_005336.1 + 130050 0.67 0.604572
Target:  5'- gGCC-GCUGCUGGCU-GCCGGCgcgagCgUGGa -3'
miRNA:   3'- -CGGcCGAUGGCCGAgUGGCCGa----G-GCC- -5'
25036 3' -62.3 NC_005336.1 + 94954 0.67 0.565903
Target:  5'- cGCgGGCgcGCCGGCggcgaCugCGGCgagcugcCCGGc -3'
miRNA:   3'- -CGgCCGa-UGGCCGa----GugGCCGa------GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.