miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25036 3' -62.3 NC_005336.1 + 131098 0.66 0.633788
Target:  5'- cGCCGGCUGCauGCcgCugCGGaggCCGc -3'
miRNA:   3'- -CGGCCGAUGgcCGa-GugGCCga-GGCc -5'
25036 3' -62.3 NC_005336.1 + 76273 0.66 0.633788
Target:  5'- -gCGGUgACUGGCU---UGGCUCCGGu -3'
miRNA:   3'- cgGCCGaUGGCCGAgugGCCGAGGCC- -5'
25036 3' -62.3 NC_005336.1 + 5390 0.66 0.633788
Target:  5'- cGgCGGCgUGCCGccCUCcgcgaugccguGCCGGCUCgCGGg -3'
miRNA:   3'- -CgGCCG-AUGGCc-GAG-----------UGGCCGAG-GCC- -5'
25036 3' -62.3 NC_005336.1 + 53531 0.66 0.633788
Target:  5'- aGCCGGaCU-CCGcGCgcgCGCCGGCgCUGc -3'
miRNA:   3'- -CGGCC-GAuGGC-CGa--GUGGCCGaGGCc -5'
25036 3' -62.3 NC_005336.1 + 136602 0.66 0.633788
Target:  5'- gGCCGcGCgGCCGcGCUCGgagUGGCUgCGGc -3'
miRNA:   3'- -CGGC-CGaUGGC-CGAGUg--GCCGAgGCC- -5'
25036 3' -62.3 NC_005336.1 + 10704 0.66 0.633788
Target:  5'- cGUCGGCgg-CGGCUCGuCCcaGGCcugCCGGc -3'
miRNA:   3'- -CGGCCGaugGCCGAGU-GG--CCGa--GGCC- -5'
25036 3' -62.3 NC_005336.1 + 47938 0.66 0.624042
Target:  5'- cGgCGGCUACgUGcGCUacccCACCGGCcucCCGGc -3'
miRNA:   3'- -CgGCCGAUG-GC-CGA----GUGGCCGa--GGCC- -5'
25036 3' -62.3 NC_005336.1 + 8710 0.66 0.624042
Target:  5'- -gCGGCaugcaGCCGGCgguggggacgCACUGGUUUCGGc -3'
miRNA:   3'- cgGCCGa----UGGCCGa---------GUGGCCGAGGCC- -5'
25036 3' -62.3 NC_005336.1 + 114314 0.66 0.624042
Target:  5'- -gCGGC-ACgCGGCugUCGCUGGCggcggcgCCGGa -3'
miRNA:   3'- cgGCCGaUG-GCCG--AGUGGCCGa------GGCC- -5'
25036 3' -62.3 NC_005336.1 + 114754 0.66 0.624042
Target:  5'- uGUCGcGC-GCUGGCggaGaaGGCUCCGGg -3'
miRNA:   3'- -CGGC-CGaUGGCCGag-UggCCGAGGCC- -5'
25036 3' -62.3 NC_005336.1 + 36573 0.66 0.624042
Target:  5'- cGCgGGCUugC-GCaCGCCGGCgCCGa -3'
miRNA:   3'- -CGgCCGAugGcCGaGUGGCCGaGGCc -5'
25036 3' -62.3 NC_005336.1 + 65785 0.66 0.614301
Target:  5'- cCCGGCUGCCGuGUUCGuagaCGaCUCCGu -3'
miRNA:   3'- cGGCCGAUGGC-CGAGUg---GCcGAGGCc -5'
25036 3' -62.3 NC_005336.1 + 103432 0.66 0.614301
Target:  5'- cGCCGGCgcaAgCGGCUCGgCuuCUUCGGg -3'
miRNA:   3'- -CGGCCGa--UgGCCGAGUgGccGAGGCC- -5'
25036 3' -62.3 NC_005336.1 + 24967 0.67 0.604572
Target:  5'- -aCGGUUACCucgauCUgCACCGGCUCgGGu -3'
miRNA:   3'- cgGCCGAUGGcc---GA-GUGGCCGAGgCC- -5'
25036 3' -62.3 NC_005336.1 + 40692 0.67 0.604572
Target:  5'- aGCCGGCU-CaCGGaguaCUCGCCgGGCUCgagcgcgcaguCGGg -3'
miRNA:   3'- -CGGCCGAuG-GCC----GAGUGG-CCGAG-----------GCC- -5'
25036 3' -62.3 NC_005336.1 + 64154 0.67 0.604572
Target:  5'- -gCGGCUcuuCgCGGCgcugCGUCGGCUCUGGg -3'
miRNA:   3'- cgGCCGAu--G-GCCGa---GUGGCCGAGGCC- -5'
25036 3' -62.3 NC_005336.1 + 130050 0.67 0.604572
Target:  5'- gGCC-GCUGCUGGCU-GCCGGCgcgagCgUGGa -3'
miRNA:   3'- -CGGcCGAUGGCCGAgUGGCCGa----G-GCC- -5'
25036 3' -62.3 NC_005336.1 + 126586 0.67 0.6036
Target:  5'- gGCCGGCUAUggacgcgCGGC-CGCCaGCUCg-- -3'
miRNA:   3'- -CGGCCGAUG-------GCCGaGUGGcCGAGgcc -5'
25036 3' -62.3 NC_005336.1 + 99125 0.67 0.598743
Target:  5'- aGCCGGCUGCacuuCGGaCUCACgcacgccugggugcgCGGCgCCGc -3'
miRNA:   3'- -CGGCCGAUG----GCC-GAGUG---------------GCCGaGGCc -5'
25036 3' -62.3 NC_005336.1 + 29525 0.67 0.594862
Target:  5'- cGUCGGCgagGCCGuGCUgGCCGuGgaCCuGGa -3'
miRNA:   3'- -CGGCCGa--UGGC-CGAgUGGC-CgaGG-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.