miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25036 5' -53.6 NC_005336.1 + 131919 0.66 0.960252
Target:  5'- gCCCAGc---GAGGCCucg-CGGCUCg -3'
miRNA:   3'- aGGGUCacauCUCCGGuuaaGUCGGG- -5'
25036 5' -53.6 NC_005336.1 + 131015 0.66 0.960252
Target:  5'- cUuuGGUGUGGccGuCCAAggaugUCAGCCCu -3'
miRNA:   3'- aGggUCACAUCucC-GGUUa----AGUCGGG- -5'
25036 5' -53.6 NC_005336.1 + 74444 0.66 0.960252
Target:  5'- gCUCGGUGgAGuGGCgCAGcagaCAGCCCu -3'
miRNA:   3'- aGGGUCACaUCuCCG-GUUaa--GUCGGG- -5'
25036 5' -53.6 NC_005336.1 + 110970 0.66 0.956473
Target:  5'- gCUCGGUGUGcuGGGGCCcuUUgAGCUg -3'
miRNA:   3'- aGGGUCACAU--CUCCGGuuAAgUCGGg -5'
25036 5' -53.6 NC_005336.1 + 32840 0.66 0.956082
Target:  5'- gCCCAGaUGUcuaggccGGAGGCUAucaugCAGCgCa -3'
miRNA:   3'- aGGGUC-ACA-------UCUCCGGUuaa--GUCGgG- -5'
25036 5' -53.6 NC_005336.1 + 19940 0.66 0.952456
Target:  5'- --gCGGUGUGGcGcGCCAGUUUcugcuGGCCCc -3'
miRNA:   3'- aggGUCACAUCuC-CGGUUAAG-----UCGGG- -5'
25036 5' -53.6 NC_005336.1 + 83120 0.66 0.952456
Target:  5'- -gCCAGUcGUgcauGGAGGUCAug-CGGUCCa -3'
miRNA:   3'- agGGUCA-CA----UCUCCGGUuaaGUCGGG- -5'
25036 5' -53.6 NC_005336.1 + 101050 0.66 0.943693
Target:  5'- -gCCGGUG-AGuGGCCAccacgAGCCCg -3'
miRNA:   3'- agGGUCACaUCuCCGGUuaag-UCGGG- -5'
25036 5' -53.6 NC_005336.1 + 95643 0.68 0.905153
Target:  5'- gCCCAGacccGUGGccGCCGGcagcgcgUCGGCCCa -3'
miRNA:   3'- aGGGUCa---CAUCucCGGUUa------AGUCGGG- -5'
25036 5' -53.6 NC_005336.1 + 11600 0.68 0.898647
Target:  5'- uUCCCGGUGUccGAGaGCCAGaagCuGCCg -3'
miRNA:   3'- -AGGGUCACAu-CUC-CGGUUaa-GuCGGg -5'
25036 5' -53.6 NC_005336.1 + 133116 0.68 0.891898
Target:  5'- cCUCGGUGgAGAuGGCCAAga-AGCCg -3'
miRNA:   3'- aGGGUCACaUCU-CCGGUUaagUCGGg -5'
25036 5' -53.6 NC_005336.1 + 43526 0.69 0.870225
Target:  5'- gCCCGGUGUAcgcGGGcGCCAAgUCGGaggaCCu -3'
miRNA:   3'- aGGGUCACAU---CUC-CGGUUaAGUCg---GG- -5'
25036 5' -53.6 NC_005336.1 + 44870 0.69 0.854642
Target:  5'- gUCCCGGc--GGAGGCCGugacggAGCCCu -3'
miRNA:   3'- -AGGGUCacaUCUCCGGUuaag--UCGGG- -5'
25036 5' -53.6 NC_005336.1 + 65895 0.71 0.735596
Target:  5'- cUCUGGUGc-GAGGCCGug-CGGCCCg -3'
miRNA:   3'- aGGGUCACauCUCCGGUuaaGUCGGG- -5'
25036 5' -53.6 NC_005336.1 + 59681 0.71 0.735596
Target:  5'- cCUCGGUG-AGcAGGCCGcugcgCAGCCCu -3'
miRNA:   3'- aGGGUCACaUC-UCCGGUuaa--GUCGGG- -5'
25036 5' -53.6 NC_005336.1 + 79618 0.76 0.498212
Target:  5'- cUCCCGGUGgAGAGGUCG-UUgAGCUCg -3'
miRNA:   3'- -AGGGUCACaUCUCCGGUuAAgUCGGG- -5'
25036 5' -53.6 NC_005336.1 + 132349 1.13 0.002087
Target:  5'- gUCCCAGUGUAGAGGCCAAUUCAGCCCg -3'
miRNA:   3'- -AGGGUCACAUCUCCGGUUAAGUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.