miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25038 3' -62 NC_005336.1 + 63831 0.67 0.556604
Target:  5'- cCGCGcGGCCgCCAUGGagcgcaaguccggCGCCGCGg- -3'
miRNA:   3'- -GUGUaCCGGgGGUGCCa------------GCGGCGCau -5'
25038 3' -62 NC_005336.1 + 97148 0.67 0.554656
Target:  5'- ----cGGCCCgcgaccagcugcuggCCGCGGgccgCGCCGUGUAc -3'
miRNA:   3'- guguaCCGGG---------------GGUGCCa---GCGGCGCAU- -5'
25038 3' -62 NC_005336.1 + 55079 0.67 0.550767
Target:  5'- gCACGuUGGUgUCCGCGG-CaGCCGCGUc -3'
miRNA:   3'- -GUGU-ACCGgGGGUGCCaG-CGGCGCAu -5'
25038 3' -62 NC_005336.1 + 125922 0.67 0.550767
Target:  5'- -----aGCgCCCGCGGacgCGCCGCGUGc -3'
miRNA:   3'- guguacCGgGGGUGCCa--GCGGCGCAU- -5'
25038 3' -62 NC_005336.1 + 94975 0.67 0.549795
Target:  5'- gCGCGcGGUccacgcgCCCCGCGuauaUCGCCGCGUGc -3'
miRNA:   3'- -GUGUaCCG-------GGGGUGCc---AGCGGCGCAU- -5'
25038 3' -62 NC_005336.1 + 78305 0.67 0.531451
Target:  5'- uCACGcUGaGCCCCuCGCGGaUGCUGCGa- -3'
miRNA:   3'- -GUGU-AC-CGGGG-GUGCCaGCGGCGCau -5'
25038 3' -62 NC_005336.1 + 8706 0.67 0.531451
Target:  5'- aGCAUGGCCUCCAgcaccgacaGGUCGaccucggaCGCGUu -3'
miRNA:   3'- gUGUACCGGGGGUg--------CCAGCg-------GCGCAu -5'
25038 3' -62 NC_005336.1 + 101418 0.68 0.512385
Target:  5'- gGCAcgGGCgCCaGCGG-CGCCGCGUu -3'
miRNA:   3'- gUGUa-CCGgGGgUGCCaGCGGCGCAu -5'
25038 3' -62 NC_005336.1 + 108463 0.68 0.512385
Target:  5'- cUACAacUGGUCCCCGCGGcUGCUGUa-- -3'
miRNA:   3'- -GUGU--ACCGGGGGUGCCaGCGGCGcau -5'
25038 3' -62 NC_005336.1 + 58685 0.68 0.512385
Target:  5'- gGCAUGGCCagCgGCGGcccCGCgCGCGUGc -3'
miRNA:   3'- gUGUACCGGg-GgUGCCa--GCG-GCGCAU- -5'
25038 3' -62 NC_005336.1 + 60922 0.68 0.512385
Target:  5'- gCGCAUGgaccgcGCCCCCACG--CGCUGCGa- -3'
miRNA:   3'- -GUGUAC------CGGGGGUGCcaGCGGCGCau -5'
25038 3' -62 NC_005336.1 + 64634 0.68 0.502958
Target:  5'- gCGCGaGGCCUUCACGGacuucgCGCCGCu-- -3'
miRNA:   3'- -GUGUaCCGGGGGUGCCa-----GCGGCGcau -5'
25038 3' -62 NC_005336.1 + 60139 0.68 0.502958
Target:  5'- gCACGUGGUcgCCCUugGGgugCGgCGCGg- -3'
miRNA:   3'- -GUGUACCG--GGGGugCCa--GCgGCGCau -5'
25038 3' -62 NC_005336.1 + 41110 0.68 0.502958
Target:  5'- gGCGUGGCCaucaUCACGGccUUGCCGCc-- -3'
miRNA:   3'- gUGUACCGGg---GGUGCC--AGCGGCGcau -5'
25038 3' -62 NC_005336.1 + 71647 0.68 0.502958
Target:  5'- cCACGgaGGCCCaggcguUCGCGG-CGCCGCGg- -3'
miRNA:   3'- -GUGUa-CCGGG------GGUGCCaGCGGCGCau -5'
25038 3' -62 NC_005336.1 + 130086 0.68 0.493608
Target:  5'- gACGUGGUCUCCGCGGaCGagagCGCGg- -3'
miRNA:   3'- gUGUACCGGGGGUGCCaGCg---GCGCau -5'
25038 3' -62 NC_005336.1 + 25684 0.68 0.484338
Target:  5'- ----cGGUCCaCCGCGGUCuCCGCGg- -3'
miRNA:   3'- guguaCCGGG-GGUGCCAGcGGCGCau -5'
25038 3' -62 NC_005336.1 + 88721 0.68 0.475152
Target:  5'- gGCGuUGGCCUgcuCCGCGGUgCGCuCGCGg- -3'
miRNA:   3'- gUGU-ACCGGG---GGUGCCA-GCG-GCGCau -5'
25038 3' -62 NC_005336.1 + 125048 0.68 0.466053
Target:  5'- cCACAUcGGUaccgcaaCUCGCGGUCGCCgGUGUGg -3'
miRNA:   3'- -GUGUA-CCGg------GGGUGCCAGCGG-CGCAU- -5'
25038 3' -62 NC_005336.1 + 71516 0.68 0.466053
Target:  5'- aACGUGGCCaugCCCGCGGaCGCCuuccggcaGCGg- -3'
miRNA:   3'- gUGUACCGG---GGGUGCCaGCGG--------CGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.