miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25038 5' -46.4 NC_005336.1 + 135531 0.66 0.999944
Target:  5'- cACUGUG-GUCGcuucUGGGGGCA-GGa -3'
miRNA:   3'- -UGAUACaCAGUuuuuGCUCCCGUaCC- -5'
25038 5' -46.4 NC_005336.1 + 133679 0.66 0.999939
Target:  5'- uGCUGUGcGUgCAGGAgcuggcgcugcgcgGCGAGGGCGcgcgccugcUGGc -3'
miRNA:   3'- -UGAUACaCA-GUUUU--------------UGCUCCCGU---------ACC- -5'
25038 5' -46.4 NC_005336.1 + 23573 0.66 0.999925
Target:  5'- cGCgggGUGUGUUGGu-GCGGGGuGCggGGa -3'
miRNA:   3'- -UGa--UACACAGUUuuUGCUCC-CGuaCC- -5'
25038 5' -46.4 NC_005336.1 + 91808 0.66 0.999901
Target:  5'- --cGUGuUGUCAAGcucAGCGAGGGgAaGGa -3'
miRNA:   3'- ugaUAC-ACAGUUU---UUGCUCCCgUaCC- -5'
25038 5' -46.4 NC_005336.1 + 125610 0.66 0.99989
Target:  5'- --cGUGUGUgGAGAACGGacgcgcggcguacGGCAUGGu -3'
miRNA:   3'- ugaUACACAgUUUUUGCUc------------CCGUACC- -5'
25038 5' -46.4 NC_005336.1 + 20203 0.66 0.99989
Target:  5'- gGCUcgGUGUCGGAGuuuucguccuccuCGGuGGGCGcGGa -3'
miRNA:   3'- -UGAuaCACAGUUUUu------------GCU-CCCGUaCC- -5'
25038 5' -46.4 NC_005336.1 + 24813 0.66 0.99987
Target:  5'- ------aGUCAAAcauuccuuGACGAGGGCGcGGg -3'
miRNA:   3'- ugauacaCAGUUU--------UUGCUCCCGUaCC- -5'
25038 5' -46.4 NC_005336.1 + 115753 0.67 0.999831
Target:  5'- cGCUGcGUGU-----ACG-GGGCAUGGa -3'
miRNA:   3'- -UGAUaCACAguuuuUGCuCCCGUACC- -5'
25038 5' -46.4 NC_005336.1 + 38473 0.67 0.999831
Target:  5'- ----gGUGcUCAcgGGCGGcacGGGCGUGGg -3'
miRNA:   3'- ugauaCAC-AGUuuUUGCU---CCCGUACC- -5'
25038 5' -46.4 NC_005336.1 + 110121 0.67 0.99955
Target:  5'- ----cGUGcC----GCGAGGGCAUGGc -3'
miRNA:   3'- ugauaCACaGuuuuUGCUCCCGUACC- -5'
25038 5' -46.4 NC_005336.1 + 15910 0.68 0.999296
Target:  5'- ------cGUgAAcGugGAGGGCAUGGg -3'
miRNA:   3'- ugauacaCAgUUuUugCUCCCGUACC- -5'
25038 5' -46.4 NC_005336.1 + 57509 0.68 0.998904
Target:  5'- ----cGUGUCGcggccgucguucGGAACGgggaucgGGGGCAUGGg -3'
miRNA:   3'- ugauaCACAGU------------UUUUGC-------UCCCGUACC- -5'
25038 5' -46.4 NC_005336.1 + 10178 0.68 0.998686
Target:  5'- cCUcgGUGUCGGGGcGCGAGuaGGCGcUGGg -3'
miRNA:   3'- uGAuaCACAGUUUU-UGCUC--CCGU-ACC- -5'
25038 5' -46.4 NC_005336.1 + 13283 0.69 0.998402
Target:  5'- -aUGUGgggGUuucgagaagcgCGGAGACGAGGGCGgcgGGg -3'
miRNA:   3'- ugAUACa--CA-----------GUUUUUGCUCCCGUa--CC- -5'
25038 5' -46.4 NC_005336.1 + 55847 0.7 0.996089
Target:  5'- ----cGUGcUCGAGAACGGGcGCGUGGu -3'
miRNA:   3'- ugauaCAC-AGUUUUUGCUCcCGUACC- -5'
25038 5' -46.4 NC_005336.1 + 57796 0.71 0.990271
Target:  5'- uGCUG-GUGUUccugguGAAccggcGCGGGGGCAUGGc -3'
miRNA:   3'- -UGAUaCACAGu-----UUU-----UGCUCCCGUACC- -5'
25038 5' -46.4 NC_005336.1 + 74792 0.73 0.973907
Target:  5'- gGCUG-GUGUuccugcgcccCGAGGACgcgGAGGGCGUGGg -3'
miRNA:   3'- -UGAUaCACA----------GUUUUUG---CUCCCGUACC- -5'
25038 5' -46.4 NC_005336.1 + 84365 0.75 0.94328
Target:  5'- ---uUGUGUCGGugcAGCGAGGGC-UGGc -3'
miRNA:   3'- ugauACACAGUUu--UUGCUCCCGuACC- -5'
25038 5' -46.4 NC_005336.1 + 131517 1.11 0.018066
Target:  5'- uACUAUGUGUCAAAAACGAGGGCAUGGc -3'
miRNA:   3'- -UGAUACACAGUUUUUGCUCCCGUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.