miRNA display CGI


Results 21 - 40 of 395 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25039 3' -56.5 NC_005336.1 + 45326 0.66 0.873092
Target:  5'- cGGCCGUCuCG-GCGGGgUCGACGg- -3'
miRNA:   3'- aCUGGCGGuGCgCGCUCgAGUUGUag -5'
25039 3' -56.5 NC_005336.1 + 83304 0.66 0.873092
Target:  5'- gGGCCGCUggGCGCGcGCccCGGCGg- -3'
miRNA:   3'- aCUGGCGGugCGCGCuCGa-GUUGUag -5'
25039 3' -56.5 NC_005336.1 + 97876 0.66 0.873092
Target:  5'- -uGCaCGCCGCGCuccGCGAGCgccUCGGCGc- -3'
miRNA:   3'- acUG-GCGGUGCG---CGCUCG---AGUUGUag -5'
25039 3' -56.5 NC_005336.1 + 10247 0.66 0.873092
Target:  5'- uUGAgCaCCGCGgagGCGAGCUCGGCGc- -3'
miRNA:   3'- -ACUgGcGGUGCg--CGCUCGAGUUGUag -5'
25039 3' -56.5 NC_005336.1 + 113446 0.66 0.873092
Target:  5'- gGAcuCCGCgGCGCGCGcGCccggCGACcgCg -3'
miRNA:   3'- aCU--GGCGgUGCGCGCuCGa---GUUGuaG- -5'
25039 3' -56.5 NC_005336.1 + 106013 0.66 0.873092
Target:  5'- cGACggCGCCGaGCGCGuGCUCAuCcUCa -3'
miRNA:   3'- aCUG--GCGGUgCGCGCuCGAGUuGuAG- -5'
25039 3' -56.5 NC_005336.1 + 106628 0.66 0.873092
Target:  5'- -cACCGUgcagagCACGCGCaugGAGCUCGGC-UCc -3'
miRNA:   3'- acUGGCG------GUGCGCG---CUCGAGUUGuAG- -5'
25039 3' -56.5 NC_005336.1 + 64481 0.66 0.873092
Target:  5'- cGACCGCCGCuaCGUGAacguGCacuUCGugGUCg -3'
miRNA:   3'- aCUGGCGGUGc-GCGCU----CG---AGUugUAG- -5'
25039 3' -56.5 NC_005336.1 + 50968 0.66 0.873092
Target:  5'- cGugCGCCG-GCGCGgcGGC-CGgcGCAUCa -3'
miRNA:   3'- aCugGCGGUgCGCGC--UCGaGU--UGUAG- -5'
25039 3' -56.5 NC_005336.1 + 66402 0.66 0.873092
Target:  5'- cGGCCGCUgccuCGCGCGuGCcgaggacggccUCGACGg- -3'
miRNA:   3'- aCUGGCGGu---GCGCGCuCG-----------AGUUGUag -5'
25039 3' -56.5 NC_005336.1 + 130867 0.66 0.873092
Target:  5'- gGACagaGCC-CGCGUGGGCgagGugGUCa -3'
miRNA:   3'- aCUGg--CGGuGCGCGCUCGag-UugUAG- -5'
25039 3' -56.5 NC_005336.1 + 94428 0.66 0.873092
Target:  5'- aUGcCCGCguuuacCGgGCgGUGAGCUCAAUGUCg -3'
miRNA:   3'- -ACuGGCG------GUgCG-CGCUCGAGUUGUAG- -5'
25039 3' -56.5 NC_005336.1 + 48127 0.66 0.873092
Target:  5'- gGugCGCCgGCGCGCuugccGGGCUC-ACGa- -3'
miRNA:   3'- aCugGCGG-UGCGCG-----CUCGAGuUGUag -5'
25039 3' -56.5 NC_005336.1 + 97582 0.66 0.873092
Target:  5'- cGGCCGCgGUGCGCGGGUaCcGCcgCg -3'
miRNA:   3'- aCUGGCGgUGCGCGCUCGaGuUGuaG- -5'
25039 3' -56.5 NC_005336.1 + 81306 0.66 0.872356
Target:  5'- cGAgCGCgCGCGCGCGcccuggcugcgagAGCagCAGCAUg -3'
miRNA:   3'- aCUgGCG-GUGCGCGC-------------UCGa-GUUGUAg -5'
25039 3' -56.5 NC_005336.1 + 109945 0.66 0.872356
Target:  5'- cGACCuGCgCGCGgcucgucUGCGAGUggccauacuUCAACAUCa -3'
miRNA:   3'- aCUGG-CG-GUGC-------GCGCUCG---------AGUUGUAG- -5'
25039 3' -56.5 NC_005336.1 + 110416 0.66 0.871618
Target:  5'- -aGCCGCUgaugcgcagcgcgGCGCGCGugcccaaGGC-CAGCGUCu -3'
miRNA:   3'- acUGGCGG-------------UGCGCGC-------UCGaGUUGUAG- -5'
25039 3' -56.5 NC_005336.1 + 73865 0.66 0.868645
Target:  5'- -uACCGCguCG-GCGAcaccgugagcggcacGCUCAACGUCg -3'
miRNA:   3'- acUGGCGguGCgCGCU---------------CGAGUUGUAG- -5'
25039 3' -56.5 NC_005336.1 + 73538 0.66 0.865637
Target:  5'- cGACC-CCuuCGCGUGGGCgaUCAACuUCc -3'
miRNA:   3'- aCUGGcGGu-GCGCGCUCG--AGUUGuAG- -5'
25039 3' -56.5 NC_005336.1 + 55471 0.66 0.865637
Target:  5'- cGACCG-CACGCGCcucgcccGGCUaCAcCAUCa -3'
miRNA:   3'- aCUGGCgGUGCGCGc------UCGA-GUuGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.