miRNA display CGI


Results 21 - 40 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25039 5' -53.3 NC_005336.1 + 24566 0.66 0.969593
Target:  5'- -aAACCUGcaacuUCGCGCA-CGCGcGCa -3'
miRNA:   3'- ggUUGGACuac--AGCGCGUaGCGCuCG- -5'
25039 5' -53.3 NC_005336.1 + 10513 0.66 0.969593
Target:  5'- gCgAACCgcugcGUCGCGgG-CGCGGGCg -3'
miRNA:   3'- -GgUUGGacua-CAGCGCgUaGCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 30431 0.66 0.969593
Target:  5'- -uGGCUaggGcgGcCGcCGCGUCGCGGGCc -3'
miRNA:   3'- ggUUGGa--CuaCaGC-GCGUAGCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 60456 0.66 0.969292
Target:  5'- cCCGGCCUucaucgaGAUGcCGCGgCggCGCgugGAGCa -3'
miRNA:   3'- -GGUUGGA-------CUACaGCGC-GuaGCG---CUCG- -5'
25039 5' -53.3 NC_005336.1 + 20754 0.66 0.966491
Target:  5'- uCCGuGCCgcugGUCGCGCGgaucugCGCGcGCa -3'
miRNA:   3'- -GGU-UGGacuaCAGCGCGUa-----GCGCuCG- -5'
25039 5' -53.3 NC_005336.1 + 68889 0.66 0.966491
Target:  5'- uUCAGCaaGAagaccaucCGCGCgAUCGCGAGCu -3'
miRNA:   3'- -GGUUGgaCUaca-----GCGCG-UAGCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 95003 0.66 0.966491
Target:  5'- aCCAGCagcaGUGcgCGCGCGguUCGCGGGa -3'
miRNA:   3'- -GGUUGgac-UACa-GCGCGU--AGCGCUCg -5'
25039 5' -53.3 NC_005336.1 + 3851 0.66 0.966491
Target:  5'- gCCGccGCC-GAgcgcccgCGCGCGUCGCGcGCc -3'
miRNA:   3'- -GGU--UGGaCUaca----GCGCGUAGCGCuCG- -5'
25039 5' -53.3 NC_005336.1 + 76571 0.66 0.966491
Target:  5'- uCCAGuCCgUGAagacGUCGCGCAggUGCuuGAGCa -3'
miRNA:   3'- -GGUU-GG-ACUa---CAGCGCGUa-GCG--CUCG- -5'
25039 5' -53.3 NC_005336.1 + 1605 0.66 0.966491
Target:  5'- gCCGACCUGc-GUCcgaGCGa---GCGAGCg -3'
miRNA:   3'- -GGUUGGACuaCAG---CGCguagCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 38832 0.66 0.966491
Target:  5'- aCGACCaGAUGg-GCGaCAUCGUGGucGCg -3'
miRNA:   3'- gGUUGGaCUACagCGC-GUAGCGCU--CG- -5'
25039 5' -53.3 NC_005336.1 + 1605 0.66 0.966491
Target:  5'- gCCGACCUGc-GUCcgaGCGa---GCGAGCg -3'
miRNA:   3'- -GGUUGGACuaCAG---CGCguagCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 96180 0.66 0.966491
Target:  5'- aCGAUCUccacGgcGUCGCcaGCGcgCGCGAGCg -3'
miRNA:   3'- gGUUGGA----CuaCAGCG--CGUa-GCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 36322 0.66 0.966491
Target:  5'- uUCAugCg---GUCGCGCAcgagCGCGAcGCc -3'
miRNA:   3'- -GGUugGacuaCAGCGCGUa---GCGCU-CG- -5'
25039 5' -53.3 NC_005336.1 + 3851 0.66 0.966491
Target:  5'- gCCGccGCC-GAgcgcccgCGCGCGUCGCGcGCc -3'
miRNA:   3'- -GGU--UGGaCUaca----GCGCGUAGCGCuCG- -5'
25039 5' -53.3 NC_005336.1 + 85188 0.66 0.963514
Target:  5'- aCCAGCgaGcccUCGCGCucccaguacucgcgCGCGAGCa -3'
miRNA:   3'- -GGUUGgaCuacAGCGCGua------------GCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 9948 0.66 0.963172
Target:  5'- aCAGCgUGuGUGUcCGCGCcccCGuCGAGCa -3'
miRNA:   3'- gGUUGgAC-UACA-GCGCGua-GC-GCUCG- -5'
25039 5' -53.3 NC_005336.1 + 124873 0.66 0.963172
Target:  5'- aCAggcGCUcGcgGcCGCGCGgcgCGCGGGCa -3'
miRNA:   3'- gGU---UGGaCuaCaGCGCGUa--GCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 39512 0.66 0.963172
Target:  5'- aCGugCUGuacgCGCGCAUCuuCGGGCu -3'
miRNA:   3'- gGUugGACuacaGCGCGUAGc-GCUCG- -5'
25039 5' -53.3 NC_005336.1 + 28258 0.66 0.963172
Target:  5'- gCGGCgUGcgGUgGCGCGgcacugCGuCGGGCa -3'
miRNA:   3'- gGUUGgACuaCAgCGCGUa-----GC-GCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.